8A3H Hydrolase date Jan 20, 1999
title Cellobiose-Derived Imidazole Complex Of The Endoglucanase Ce Bacillus Agaradhaerens At 0.97 A Resolution
authors A.Varrot, M.Schulein, M.Pipelier, A.Vasella, G.J.Davies
compound source
Molecule: Protein (Endoglucanase)
Chain: A
Fragment: Catalytic Core Domain
Synonym: Cellulase
Ec: 3.2.1.4
Engineered: Yes
Organism_scientific: Bacillus Agaradhaerens
Organism_taxid: 76935
Strain: Ac13 (Ncimb 40482)
Expression_system: Bacillus Subtilis
Expression_system_taxid: 1423
Expression_system_strain: Pl2306
Expression_system_vector_type: Bacillus, Cellulase Negative
Expression_system_vector: Pmol995
Expression_system_plasmid: Therramyl-Amylase Promoter Syste
symmetry Space Group: P 21 21 21
R_factor 0.104 R_Free 0.118
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.450 69.880 77.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.97 Å
ligand ACT, GOL, IDC, SO4 enzyme Hydrolase E.C.3.2.1.4 BRENDA
note 8A3H is a representative structure
related structures by homologous chain: 1W3L, 7A3H
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (8a3h.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 8A3H
  • CSU: Contacts of Structural Units for 8A3H
  • Likely Quarternary Molecular Structure file(s) for 8A3H
  • Structure Factors (1088 Kb)
  • Retrieve 8A3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8A3H from S2C, [Save to disk]
  • Re-refined 8a3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 8A3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 8A3H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 8A3H from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 8A3H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d8a3ha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8a3h] [8a3h_A]
  • SWISS-PROT database: [P06565]
  • Domain organization of [GUN2_BACS4] by SWISSPFAM
  • Other resources with information on 8A3H
  • Community annotation for 8A3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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