8KME	Hydrolase Hydrolase Inhibitor	date	Mar 21, 1999
title	Crystal Structure Of Human Alpha-Thrombin Inhibited With Sel
authors	I.Mochalkin, A.Tulinsky
compound		source
Molecule: Thrombin Chain: 1 Fragment: Light Chain Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Thrombin Chain: 2 Fragment: Heavy Chain Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: N-Acetylhirudin Chain: 3 Engineered: Yes Other_details: Synthetic		Synthetic: Yes
Molecule: Sel2770 Chain: 4 Engineered: Yes Other_details: Synthetic		Synthetic: Yes
symmetry	Space Group: C 1 2 1	R_factor 0.167 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.660 72.000 73.450 90.00 101.20 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	0BN, ACE, CHG, MLY, NA, NH2, TYS	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1AIX, 1C4V
Gene Ontology	Chain Function Process Component 1 2
Primary reference	Structures of thrombin retro-inhibited with SEL2711 and SEL2770 as they relate to factor Xa binding., Mochalkin I, Tulinsky A, Acta Crystallogr D Biol Crystallogr 1999 Apr;55 ( Pt 4):785-93. PMID:10089309

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (8kme.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 8KME CSU: Contacts of Structural Units for 8KME Likely Quarternary Molecular Structure file(s) for 8KME Retrieve 8KME in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 8KME from S2C, [Save to disk]

View 8KME in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 8KME

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 8KME, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d8kme.1, region 1:,2 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [8kme_1] [8kme_2] [8kme_3] [8kme] [8kme_4] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 8KME: [Tryp_SPc ] by SMART

Other resources with information on 8KME

Community annotation for 8KME at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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