8RUC	Lyase (Carbon-Carbon)	date	Feb 22, 1996
title	Activated Spinach Rubisco Complexed With 2-Carboxyarabinitol Bisphosphate
authors	I.Andersson, S.Knight, C.I.Branden
compound		source
Molecule: Ribulose-1,5-Bisphosphate Carboxylaseoxygenase Chain: A, C, E, G Synonym: Rubisco Ec: 4.1.1.39		Organism_scientific: Spinacia Oleracea Organism_common: Spinach Organism_taxid: 3562 Organ: Leaf
Molecule: Ribulose-1,5-Bisphosphate Carboxylaseoxygenase Chain: I, J, K, L Synonym: Rubisco Ec: 4.1.1.39		Organism_scientific: Spinacia Oleracea Organism_common: Spinach Organism_taxid: 3562 Organ: Leaf
symmetry	Space Group: C 2 2 21	R_factor 0.211 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 157.200 157.200 201.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CAP, KCX, MG	enzyme	Lyase E.C.4.1.1.39 BRENDA
note	8RUC (Molecule of the Month:pdb11)supersedes 8RUB
related structures	by homologous chain: 1GK8, 1IR1, 1SVD, 1WDD
Gene Ontology	Chain Function Process Component A, E, C, G J, K, I, L
Primary reference	Large structures at high resolution: the 1.6 A crystal structure of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase complexed with 2-carboxyarabinitol bisphosphate., Andersson I, J Mol Biol 1996 May 31;259(1):160-74. PMID:8648644

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk] Biological Unit Coordinates (8ruc.pdb1.gz) 806 Kb LPC: Ligand-Protein Contacts for 8RUC CSU: Contacts of Structural Units for 8RUC Likely Quarternary Molecular Structure file(s) for 8RUC Structure Factors (1749 Kb) Retrieve 8RUC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 8RUC from S2C, [Save to disk] Re-refined 8ruc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 8RUC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 8RUC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 8RUC, from MSDmotif at EBI Genome occurence of 8RUC's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d8ruca1, region A:148-475 [Jmol] [rasmolscript] [script source]     - Domain d8ruca2, region A:9-147 [Jmol] [rasmolscript] [script source]     - Domain d8rucc1, region C:148-475 [Jmol] [rasmolscript] [script source]     - Domain d8rucc2, region C:9-147 [Jmol] [rasmolscript] [script source]     - Domain d8ruce1, region E:148-475 [Jmol] [rasmolscript] [script source]     - Domain d8ruce2, region E:9-147 [Jmol] [rasmolscript] [script source]     - Domain d8rucg1, region G:148-475 [Jmol] [rasmolscript] [script source]     - Domain d8rucg2, region G:9-147 [Jmol] [rasmolscript] [script source]     - Domain d8ruci_, region I [Jmol] [rasmolscript] [script source]     - Domain d8rucj_, region J [Jmol] [rasmolscript] [script source]     - Domain d8ruck_, region K [Jmol] [rasmolscript] [script source]     - Domain d8rucl_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [8ruc_L] [8ruc_I] [8ruc_J] [8ruc] [8ruc_A] [8ruc_K] [8ruc_C] [8ruc_G] [8ruc_E] SWISS-PROT database: [P00875] [P00870] Domain organization of [RBL_SPIOL] [RBS1_SPIOL] by SWISSPFAM Domain found in 8RUC: [RuBisCO_small ] by SMART

Other resources with information on 8RUC

Community annotation for 8RUC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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