9LDT Oxidoreductase(Choh(D)-Nad+(A)) date Nov 26, 1991
title Design And Synthesis Of New Enzymes Based On The Lactate Deh Framework
authors C.R.Dunn, J.J.Holbrook, H.Muirhead
compound source
Molecule: Lactate Dehydrogenase
Chain: A, B
Ec: 1.1.1.27
Engineered: Yes
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 21 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.300 136.390 86.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACE, NAD, OXM, SO4 BindingDB enzyme Oxidoreductase E.C.1.1.1.27 BRENDA
related structures by homologous chain: 1LDM, 6LDH
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign and synthesis of new enzymes based on the lactate dehydrogenase framework., Dunn CR, Wilks HM, Halsall DJ, Atkinson T, Clarke AR, Muirhead H, Holbrook JJ, Philos Trans R Soc Lond B Biol Sci 1991 May 29;332(1263):177-84. PMID:1678537
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (9ldt.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 9LDT
  • CSU: Contacts of Structural Units for 9LDT
  • Likely Quarternary Molecular Structure file(s) for 9LDT
  • Retrieve 9LDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 9LDT from S2C, [Save to disk]
    • View 9LDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 9LDT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 9LDT, from MSDmotif at EBI
  • Genome occurence of 9LDT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d9ldta1, region A:1-162 [Jmol] [rasmolscript] [script source]
        - Domain d9ldta2, region A:163-331 [Jmol] [rasmolscript] [script source]
        - Domain d9ldtb1, region B:1-162 [Jmol] [rasmolscript] [script source]
        - Domain d9ldtb2, region B:163-331 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [9ldt_A] [9ldt_B] [9ldt]
  • SWISS-PROT database: [P00339]
  • Domain organization of [LDHA_PIG] by SWISSPFAM
    • Other resources with information on 9LDT
  • Community annotation for 9LDT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 9LDT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science