9XIA Isomerase(Intramolecular Oxidoreductase) date Oct 11, 1990
title X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms: Nativ In Complex With Substrate And With A Mechanism-Designed Ina
authors H.L.Carrell, J.P.Glusker
compound source
Molecule: Xylose Isomerase
Chain: A
Ec: 5.3.1.5
Engineered: Yes
Organism_scientific: Streptomyces Rubiginosus
Organism_taxid: 1929
symmetry Space Group: I 2 2 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.800 100.000 103.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand DFR, MN enzyme Isomerase E.C.5.3.1.5 BRENDA
related structures by homologous chain: 1CLK, 8XIA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray analysis of D-xylose isomerase at 1.9 A: native enzyme in complex with substrate and with a mechanism-designed inactivator., Carrell HL, Glusker JP, Burger V, Manfre F, Tritsch D, Biellmann JF, Proc Natl Acad Sci U S A 1989 Jun;86(12):4440-4. PMID:2734296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (9xia.pdb1.gz) 254 Kb
  • LPC: Ligand-Protein Contacts for 9XIA
  • CSU: Contacts of Structural Units for 9XIA
  • Likely Quarternary Molecular Structure file(s) for 9XIA
  • Retrieve 9XIA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 9XIA from S2C, [Save to disk]
  • View 9XIA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 9XIA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 9XIA, from MSDmotif at EBI
  • Genome occurence of 9XIA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d9xia__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [9xia] [9xia_A]
  • SWISS-PROT database: [P24300]
  • Domain organization of [XYLA_STRRU] by SWISSPFAM
  • Other resources with information on 9XIA
  • Community annotation for 9XIA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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