data_1C9Z # _entry.id 1C9Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1C9Z NDB DD0018 RCSB RCSB009476 WWPDB D_1000009476 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1D32 _pdbx_database_related.details DITERCALINIUM-CGCG _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1C9Z _pdbx_database_status.recvd_initial_deposition_date 1999-08-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Williams, L.D.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Effects of cationic charge on three-dimensional structures of intercalative complexes: structure of a bis-intercalated DNA complex solved by MAD phasing. ; _citation.journal_abbrev Curr.Med.Chem. _citation.journal_volume 7 _citation.page_first 59 _citation.page_last 71 _citation.year 2000 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 0929-8673 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10637357 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Shui, X.' 1 primary 'Peek, M.E.' 2 primary 'Lipscomb, L.A.' 3 primary 'Gao, Q.' 4 primary 'Ogata, C.' 5 primary 'Roques, B.P.' 6 primary 'Garbay-Jaureguiberry, C.' 7 primary 'Wilkinson, A.P.' 8 primary 'Williams, L.D.' 9 # _cell.entry_id 1C9Z _cell.length_a 28.240 _cell.length_b 28.240 _cell.length_c 72.744 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1C9Z _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 1 ? ? ? 'COMPLEXED WITH BIS-INTERCALATOR D232' 2 non-polymer syn '1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE' 761.008 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details SYNTHETIC # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1C9Z _struct_ref.pdbx_db_accession 1C9Z _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1C9Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1C9Z _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 232 non-polymer . '1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE' 'BIS INTERCALATOR D232' 'C49 H56 N6 O2 2' 761.008 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.entry_id 1C9Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.50 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'MPD, SPERMINE, MAGNESIUM CHLORIDE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SPERMINE ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 'SODIUM CACODYLATE' ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'UCSD MARK II' _diffrn_detector.pdbx_collection_date 1995-09-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1C9Z _reflns.observed_criterion_sigma_I 4.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 10.0 _reflns.d_resolution_high 2.4 _reflns.number_obs 4698 _reflns.number_all 5220 _reflns.percent_possible_obs 91 _reflns.pdbx_Rmerge_I_obs 0.0510000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.2 _reflns.B_iso_Wilson_estimate 21 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.51 _reflns_shell.percent_possible_all 84 _reflns_shell.Rmerge_I_obs 0.0600000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1C9Z _refine.ls_number_reflns_obs 4682 _refine.ls_number_reflns_all 5220 _refine.pdbx_ls_sigma_I 2. _refine.pdbx_ls_sigma_F 4. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs 90 _refine.ls_R_factor_obs 0.1961000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1961000 _refine.ls_R_factor_R_free 0.1961000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 99 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 149 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 10 # _struct.entry_id 1C9Z _struct.title D232-CGTACG _struct.pdbx_descriptor ;5'-D(*CP*GP*TP*AP*CP*G)-3', BIS-INTERCALATOR D232 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1C9Z _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, INTERCALATOR, INTERCALATION, DRUG, MAJOR GROOVE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B 232 . C27 ? ? ? 1_555 B 232 . C28 ? ? A 232 7 A 232 7 11_556 ? ? ? ? ? ? ? 1.533 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 11_556 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE 232 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DC A 1 ? DC A 1 . ? 1_555 ? 2 AC1 7 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 7 DT A 3 ? DT A 3 . ? 1_555 ? 4 AC1 7 DA A 4 ? DA A 4 . ? 5_565 ? 5 AC1 7 DC A 5 ? DC A 5 . ? 11_556 ? 6 AC1 7 DG A 6 ? DG A 6 . ? 11_556 ? 7 AC1 7 DG A 6 ? DG A 6 . ? 5_555 ? # _database_PDB_matrix.entry_id 1C9Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1C9Z _atom_sites.fract_transf_matrix[1][1] 0.035411 _atom_sites.fract_transf_matrix[1][2] 0.020444 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040889 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013747 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 7.683 22.188 63.548 1.00 66.53 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.095 22.153 63.263 1.00 64.16 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 9.626 20.740 62.890 1.00 59.37 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 9.367 19.792 63.927 1.00 50.31 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 8.968 20.177 61.632 1.00 57.26 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 9.703 20.657 60.506 1.00 60.41 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 9.175 18.702 61.842 1.00 51.81 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 9.039 18.548 63.323 1.00 40.87 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 7.709 18.251 63.794 1.00 26.40 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 7.379 16.946 63.890 1.00 26.44 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 8.142 16.059 63.534 1.00 26.37 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 6.167 16.642 64.393 1.00 27.59 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 5.318 17.591 64.793 1.00 24.18 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 4.125 17.238 65.265 1.00 22.36 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 5.659 18.958 64.694 1.00 26.98 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 6.881 19.227 64.213 1.00 23.65 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 9.055 21.120 59.105 1.00 54.90 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 10.215 21.596 58.287 1.00 49.83 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 7.813 21.935 59.309 1.00 44.46 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 8.564 19.732 58.633 1.00 47.74 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 7.979 19.753 57.385 1.00 39.21 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 8.283 18.424 56.904 1.00 31.31 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 7.433 17.495 57.568 1.00 29.54 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 8.001 18.438 55.475 1.00 30.04 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 8.918 17.524 54.928 1.00 33.42 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 6.566 18.011 55.467 1.00 26.87 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 6.434 17.090 56.636 1.00 24.35 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 5.128 17.185 57.299 1.00 17.51 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 4.361 18.261 57.651 1.00 12.82 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 3.233 17.909 58.245 1.00 19.11 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 3.270 16.531 58.259 1.00 5.53 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 2.392 15.621 58.771 1.00 10.08 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 1.355 15.802 59.366 1.00 19.86 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 2.826 14.356 58.592 1.00 13.68 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 3.980 14.009 57.984 1.00 11.08 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 4.258 12.738 57.873 1.00 18.36 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 4.846 14.847 57.506 1.00 14.79 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 4.427 16.093 57.701 1.00 11.66 ? 2 DG A C4 1 ATOM 39 P P . DT A 1 3 ? 9.035 17.322 53.366 1.00 27.55 ? 3 DT A P 1 ATOM 40 O OP1 . DT A 1 3 ? 10.456 17.017 53.078 1.00 33.57 ? 3 DT A OP1 1 ATOM 41 O OP2 . DT A 1 3 ? 8.302 18.428 52.715 1.00 28.25 ? 3 DT A OP2 1 ATOM 42 O "O5'" . DT A 1 3 ? 8.218 15.996 53.065 1.00 27.19 ? 3 DT A "O5'" 1 ATOM 43 C "C5'" . DT A 1 3 ? 8.827 14.781 53.503 1.00 23.94 ? 3 DT A "C5'" 1 ATOM 44 C "C4'" . DT A 1 3 ? 7.874 13.633 53.437 1.00 22.72 ? 3 DT A "C4'" 1 ATOM 45 O "O4'" . DT A 1 3 ? 6.656 13.936 54.116 1.00 24.92 ? 3 DT A "O4'" 1 ATOM 46 C "C3'" . DT A 1 3 ? 7.540 13.387 52.013 1.00 23.69 ? 3 DT A "C3'" 1 ATOM 47 O "O3'" . DT A 1 3 ? 7.933 12.041 51.754 1.00 24.14 ? 3 DT A "O3'" 1 ATOM 48 C "C2'" . DT A 1 3 ? 6.063 13.748 51.973 1.00 24.38 ? 3 DT A "C2'" 1 ATOM 49 C "C1'" . DT A 1 3 ? 5.570 13.473 53.360 1.00 18.44 ? 3 DT A "C1'" 1 ATOM 50 N N1 . DT A 1 3 ? 4.432 14.275 53.849 1.00 16.06 ? 3 DT A N1 1 ATOM 51 C C2 . DT A 1 3 ? 3.493 13.625 54.580 1.00 10.33 ? 3 DT A C2 1 ATOM 52 O O2 . DT A 1 3 ? 3.504 12.435 54.818 1.00 21.65 ? 3 DT A O2 1 ATOM 53 N N3 . DT A 1 3 ? 2.480 14.341 55.064 1.00 19.03 ? 3 DT A N3 1 ATOM 54 C C4 . DT A 1 3 ? 2.311 15.662 54.875 1.00 18.77 ? 3 DT A C4 1 ATOM 55 O O4 . DT A 1 3 ? 1.351 16.188 55.391 1.00 24.63 ? 3 DT A O4 1 ATOM 56 C C5 . DT A 1 3 ? 3.310 16.304 54.099 1.00 16.29 ? 3 DT A C5 1 ATOM 57 C C7 . DT A 1 3 ? 3.203 17.777 53.828 1.00 15.86 ? 3 DT A C7 1 ATOM 58 C C6 . DT A 1 3 ? 4.343 15.608 53.641 1.00 13.61 ? 3 DT A C6 1 ATOM 59 P P . DA A 1 4 ? 7.767 11.360 50.341 1.00 30.41 ? 4 DA A P 1 ATOM 60 O OP1 . DA A 1 4 ? 8.821 10.338 50.257 1.00 33.14 ? 4 DA A OP1 1 ATOM 61 O OP2 . DA A 1 4 ? 7.605 12.412 49.307 1.00 26.97 ? 4 DA A OP2 1 ATOM 62 O "O5'" . DA A 1 4 ? 6.409 10.554 50.464 1.00 24.37 ? 4 DA A "O5'" 1 ATOM 63 C "C5'" . DA A 1 4 ? 6.401 9.345 51.195 1.00 13.52 ? 4 DA A "C5'" 1 ATOM 64 C "C4'" . DA A 1 4 ? 5.058 8.654 51.151 1.00 14.44 ? 4 DA A "C4'" 1 ATOM 65 O "O4'" . DA A 1 4 ? 4.103 9.566 51.674 1.00 20.29 ? 4 DA A "O4'" 1 ATOM 66 C "C3'" . DA A 1 4 ? 4.637 8.380 49.742 1.00 23.48 ? 4 DA A "C3'" 1 ATOM 67 O "O3'" . DA A 1 4 ? 3.964 7.135 49.669 1.00 34.82 ? 4 DA A "O3'" 1 ATOM 68 C "C2'" . DA A 1 4 ? 3.729 9.530 49.440 1.00 19.04 ? 4 DA A "C2'" 1 ATOM 69 C "C1'" . DA A 1 4 ? 3.076 9.750 50.744 1.00 12.81 ? 4 DA A "C1'" 1 ATOM 70 N N9 . DA A 1 4 ? 2.769 11.127 50.909 1.00 7.19 ? 4 DA A N9 1 ATOM 71 C C8 . DA A 1 4 ? 3.405 12.286 50.524 1.00 6.02 ? 4 DA A C8 1 ATOM 72 N N7 . DA A 1 4 ? 2.785 13.377 50.903 1.00 15.48 ? 4 DA A N7 1 ATOM 73 C C5 . DA A 1 4 ? 1.666 12.863 51.587 1.00 7.86 ? 4 DA A C5 1 ATOM 74 C C6 . DA A 1 4 ? 0.578 13.460 52.195 1.00 9.26 ? 4 DA A C6 1 ATOM 75 N N6 . DA A 1 4 ? 0.411 14.757 52.287 1.00 12.37 ? 4 DA A N6 1 ATOM 76 N N1 . DA A 1 4 ? -0.330 12.686 52.726 1.00 9.94 ? 4 DA A N1 1 ATOM 77 C C2 . DA A 1 4 ? -0.139 11.378 52.640 1.00 12.87 ? 4 DA A C2 1 ATOM 78 N N3 . DA A 1 4 ? 0.829 10.643 52.123 1.00 10.08 ? 4 DA A N3 1 ATOM 79 C C4 . DA A 1 4 ? 1.695 11.499 51.599 1.00 11.82 ? 4 DA A C4 1 ATOM 80 P P . DC A 1 5 ? 3.619 6.513 48.216 1.00 34.10 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? 3.770 5.054 48.365 1.00 25.13 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? 4.351 7.267 47.166 1.00 31.98 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? 2.067 6.858 48.033 1.00 31.25 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? 1.058 6.246 48.859 1.00 28.04 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? -0.275 6.964 48.818 1.00 23.39 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? -0.139 8.294 49.278 1.00 27.28 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? -0.745 7.051 47.407 1.00 25.87 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? -1.712 6.024 47.147 1.00 31.64 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? -1.266 8.443 47.316 1.00 21.49 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? -1.198 9.007 48.721 1.00 18.11 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? -0.771 10.393 48.681 1.00 16.46 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? -1.563 11.318 49.299 1.00 20.18 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? -2.579 10.957 49.870 1.00 17.14 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? -1.215 12.644 49.235 1.00 21.78 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? -0.111 13.018 48.558 1.00 20.26 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? 0.223 14.299 48.512 1.00 13.30 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? 0.722 12.062 47.904 1.00 14.40 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? 0.353 10.766 47.994 1.00 19.31 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? -2.055 5.699 45.616 1.00 36.19 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? -2.377 4.260 45.549 1.00 38.04 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? -1.036 6.283 44.716 1.00 28.55 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? -3.346 6.556 45.298 1.00 30.80 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? -4.641 6.069 45.584 1.00 27.36 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? -5.660 6.815 44.773 1.00 25.05 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? -5.419 8.200 44.968 1.00 26.66 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? -5.517 6.604 43.280 1.00 26.78 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? -6.233 5.443 42.810 1.00 31.73 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? -6.198 7.856 42.795 1.00 23.05 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? -6.147 8.844 43.944 1.00 20.54 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? -5.449 10.059 43.595 1.00 14.29 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? -4.281 10.179 42.930 1.00 9.14 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? -3.930 11.410 42.726 1.00 18.14 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? -4.929 12.132 43.338 1.00 18.52 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? -5.063 13.503 43.477 1.00 27.61 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? -4.294 14.359 43.057 1.00 34.43 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? -6.208 13.848 44.180 1.00 26.78 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? -7.094 12.977 44.693 1.00 20.65 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? -8.123 13.491 45.310 1.00 17.87 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? -6.976 11.666 44.577 1.00 25.61 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? -5.861 11.318 43.886 1.00 16.73 ? 6 DG A C4 1 HETATM 121 C C1 . 232 B 2 . ? 3.302 17.127 61.944 1.00 24.10 ? 7 232 A C1 1 HETATM 122 N N2 . 232 B 2 . ? 3.432 18.453 61.680 1.00 28.30 ? 7 232 A N2 1 HETATM 123 C C3 . 232 B 2 . ? 4.522 18.977 61.079 1.00 23.98 ? 7 232 A C3 1 HETATM 124 C C4 . 232 B 2 . ? 5.544 18.179 60.709 1.00 25.85 ? 7 232 A C4 1 HETATM 125 C C5 . 232 B 2 . ? 6.534 15.999 60.567 1.00 22.44 ? 7 232 A C5 1 HETATM 126 C C6 . 232 B 2 . ? 6.475 14.668 60.808 1.00 17.91 ? 7 232 A C6 1 HETATM 127 N N7 . 232 B 2 . ? 5.088 12.805 61.826 1.00 20.52 ? 7 232 A N7 1 HETATM 128 C C8 . 232 B 2 . ? 3.136 11.692 62.947 1.00 18.01 ? 7 232 A C8 1 HETATM 129 C C9 . 232 B 2 . ? 1.936 11.868 63.538 1.00 22.86 ? 7 232 A C9 1 HETATM 130 C C11 . 232 B 2 . ? 2.118 14.306 63.060 1.00 15.48 ? 7 232 A C11 1 HETATM 131 C C12 . 232 B 2 . ? 5.465 16.810 60.978 1.00 24.02 ? 7 232 A C12 1 HETATM 132 C C13 . 232 B 2 . ? 5.368 14.111 61.463 1.00 18.22 ? 7 232 A C13 1 HETATM 133 C C14 . 232 B 2 . ? 3.841 12.771 62.414 1.00 11.10 ? 7 232 A C14 1 HETATM 134 C C15 . 232 B 2 . ? 3.362 14.072 62.465 1.00 14.23 ? 7 232 A C15 1 HETATM 135 C C16 . 232 B 2 . ? 4.293 14.900 61.861 1.00 16.11 ? 7 232 A C16 1 HETATM 136 C C17 . 232 B 2 . ? 4.339 16.258 61.595 1.00 21.89 ? 7 232 A C17 1 HETATM 137 C C19 . 232 B 2 . ? 2.316 19.430 62.028 1.00 32.60 ? 7 232 A C19 1 HETATM 138 C C10 . 232 B 2 . ? 1.388 13.186 63.621 1.00 22.48 ? 7 232 A C10 1 HETATM 139 O O10 . 232 B 2 . ? 0.143 13.247 64.264 1.00 35.40 ? 7 232 A O10 1 HETATM 140 C C18 . 232 B 2 . ? -0.383 14.523 64.344 1.00 39.05 ? 7 232 A C18 1 HETATM 141 C C20 . 232 B 2 . ? 1.066 19.194 61.146 1.00 26.89 ? 7 232 A C20 1 HETATM 142 N N21 . 232 B 2 . ? 1.204 19.462 59.676 1.00 33.74 ? 7 232 A N21 1 HETATM 143 C C22 . 232 B 2 . ? -0.013 18.922 59.017 1.00 32.49 ? 7 232 A C22 1 HETATM 144 C C23 . 232 B 2 . ? 0.100 18.946 57.490 1.00 26.64 ? 7 232 A C23 1 HETATM 145 C C24 . 232 B 2 . ? 0.307 20.377 56.996 1.00 28.70 ? 7 232 A C24 1 HETATM 146 C C25 . 232 B 2 . ? 1.429 21.135 57.775 1.00 25.72 ? 7 232 A C25 1 HETATM 147 C C26 . 232 B 2 . ? 1.354 20.911 59.322 1.00 30.34 ? 7 232 A C26 1 HETATM 148 C C27 . 232 B 2 . ? 0.790 20.194 55.573 1.00 35.95 ? 7 232 A C27 1 HETATM 149 C C28 . 232 B 2 . ? 0.000 21.029 54.558 0.50 40.01 ? 7 232 A C28 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_556 -x+y,y,-z+3/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 109.1160000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id 232 _pdbx_struct_special_symmetry.auth_seq_id 7 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id 232 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-04-02 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-12-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MADSYS phasing . ? 1 X-PLOR refinement 3.851 ? 2 SDMS 'data reduction' . ? 3 SDMS 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.555 1.512 0.043 0.007 N 2 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.457 1.521 -0.064 0.010 N 3 1 C6 A DA 4 ? ? N1 A DA 4 ? ? 1.306 1.351 -0.045 0.007 N 4 1 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.330 1.374 -0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.42 109.40 -7.98 0.80 N 2 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 110.38 106.00 4.38 0.60 N 3 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? "C2'" A DT 3 ? ? 100.59 105.90 -5.31 0.80 N 4 1 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 117.57 122.30 -4.73 0.60 N 5 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 102.07 108.00 -5.93 0.70 N 6 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 132.89 129.30 3.59 0.50 N 7 1 C2 A DA 4 ? ? N3 A DA 4 ? ? C4 A DA 4 ? ? 105.91 110.60 -4.69 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 232 7 ? "C1'" ? B 232 1 "C1'" 2 1 N 1 A 232 7 ? "N2'" ? B 232 1 "N2'" 3 1 N 1 A 232 7 ? "C3'" ? B 232 1 "C3'" 4 1 N 1 A 232 7 ? "C4'" ? B 232 1 "C4'" 5 1 N 1 A 232 7 ? "C5'" ? B 232 1 "C5'" 6 1 N 1 A 232 7 ? "C6'" ? B 232 1 "C6'" 7 1 N 1 A 232 7 ? "N7'" ? B 232 1 "N7'" 8 1 N 1 A 232 7 ? "C8'" ? B 232 1 "C8'" 9 1 N 1 A 232 7 ? "C9'" ? B 232 1 "C9'" 10 1 N 1 A 232 7 ? "CB'" ? B 232 1 "CB'" 11 1 N 1 A 232 7 ? "CC'" ? B 232 1 "CC'" 12 1 N 1 A 232 7 ? "CD'" ? B 232 1 "CD'" 13 1 N 1 A 232 7 ? "CE'" ? B 232 1 "CE'" 14 1 N 1 A 232 7 ? "CF'" ? B 232 1 "CF'" 15 1 N 1 A 232 7 ? "CG'" ? B 232 1 "CG'" 16 1 N 1 A 232 7 ? "CH'" ? B 232 1 "CH'" 17 1 N 1 A 232 7 ? "CJ'" ? B 232 1 "CJ'" 18 1 N 1 A 232 7 ? "CA'" ? B 232 1 "CA'" 19 1 N 1 A 232 7 ? "OA'" ? B 232 1 "OA'" 20 1 N 1 A 232 7 ? "CI'" ? B 232 1 "CI'" 21 1 N 1 A 232 7 ? "CK'" ? B 232 1 "CK'" 22 1 N 1 A 232 7 ? "NL'" ? B 232 1 "NL'" 23 1 N 1 A 232 7 ? "CM'" ? B 232 1 "CM'" 24 1 N 1 A 232 7 ? "CN'" ? B 232 1 "CN'" 25 1 N 1 A 232 7 ? "CO'" ? B 232 1 "CO'" 26 1 N 1 A 232 7 ? "CP'" ? B 232 1 "CP'" 27 1 N 1 A 232 7 ? "CQ'" ? B 232 1 "CQ'" # _ndb_struct_conf_na.entry_id 1C9Z _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 11_556 0.589 -0.378 0.685 -6.552 -6.046 0.943 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 11_556 -0.252 -0.473 0.131 -6.426 -2.145 -4.641 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DT 3 1_555 A DA 4 11_556 0.246 -0.121 -0.145 4.780 -10.356 -9.422 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1 1 A DA 4 1_555 A DT 3 11_556 -0.246 -0.121 -0.145 -4.780 -10.356 -9.422 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 11_556 0.252 -0.473 0.131 6.426 -2.145 -4.641 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 11_556 -0.589 -0.378 0.685 6.553 -6.046 0.943 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 11_556 A DG 2 1_555 A DC 5 11_556 0.078 -0.098 6.815 5.112 0.734 13.460 -1.768 9.295 6.390 2.991 -20.833 14.413 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 11_556 A DT 3 1_555 A DA 4 11_556 -0.633 -0.218 3.156 1.495 -0.333 34.875 -0.315 1.273 3.129 -0.555 -2.493 34.907 2 AA_DG2DT3:DA4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DT 3 1_555 A DA 4 11_556 A DA 4 1_555 A DT 3 11_556 0.000 0.747 3.597 0.000 9.645 37.326 -0.218 0.000 3.671 14.770 0.000 38.509 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DA 4 1_555 A DT 3 11_556 A DC 5 1_555 A DG 2 11_556 0.633 -0.218 3.156 -1.495 -0.333 34.875 -0.315 -1.273 3.129 -0.555 2.493 34.907 4 AA_DA4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 11_556 A DG 6 1_555 A DC 1 11_556 -0.078 -0.098 6.815 -5.112 0.734 13.460 -1.768 -9.294 6.390 2.991 20.833 14.413 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '1,3-DI[[[10-METHOXY-7H-PYRIDO[4,3-C]CARBAZOL-2-IUMYL]-ETHYL]-PIPERIDIN-4-YL]-PROPANE' _pdbx_entity_nonpoly.comp_id 232 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 232 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 7 _pdbx_nonpoly_scheme.auth_seq_num 7 _pdbx_nonpoly_scheme.pdb_mon_id 232 _pdbx_nonpoly_scheme.auth_mon_id 232 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . #