data_1DN8 # _entry.id 1DN8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DN8 pdb_00001dn8 10.2210/pdb1dn8/pdb RCSB ZDJ018 ? ? WWPDB D_1000172853 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1988-04-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-18 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_detector 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_detector.detector' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DN8 _pdbx_database_status.recvd_initial_deposition_date 1987-05-12 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brennan, R.G.' 1 'Westhof, E.' 2 'Sundaralingam, M.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structure of a Z-DNA with two different backbone chain conformations. Stabilization of the decadeoxyoligonucleotide d(CGTACGTACG) by [Co(NH3)6]3+ binding to the guanine. ; J.Biomol.Struct.Dyn. 3 649 665 1986 JBSDD6 US 0739-1102 0646 ? 3271042 ? 1 'Crystallization and Preliminary Crystallographic Studies of the Decadeoxyoligonucleotide d(CpGpTpApCpGpTpApCpG)' J.Mol.Biol. 181 561 563 1985 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brennan, R.G.' 1 ? primary 'Westhof, E.' 2 ? primary 'Sundaralingam, M.' 3 ? 1 'Brennan, R.G.' 4 ? 1 'Sundaralingam, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3') ; 588.441 2 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can TG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'COBALT HEXAMMINE(III)' _pdbx_entity_nonpoly.comp_id NCO # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n B 1 1 DT 1 3 3 DT T B . n B 1 2 DG 2 4 4 DG G B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NCO _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 5 _pdbx_nonpoly_scheme.auth_seq_num 5 _pdbx_nonpoly_scheme.pdb_mon_id NCO _pdbx_nonpoly_scheme.auth_mon_id NCO _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DN8 _cell.length_a 17.930 _cell.length_b 17.930 _cell.length_c 43.410 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DN8 _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # _exptl.entry_id 1DN8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_percent_sol 28.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 279.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, temperature 279.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 PROPANOL ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 '[CO(NH3)6]CL3' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 PROPANOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'ENRAF-NONIUS CAD4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1DN8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.500 _reflns.number_obs 506 _reflns.number_all 1250 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1DN8 _refine.ls_number_reflns_obs 506 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2500000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.01 _refine.occupancy_max 1.00 _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 84 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 91 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1DN8 _database_PDB_matrix.origx[1][1] 0.055772 _database_PDB_matrix.origx[1][2] 0.032200 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 0.064400 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 0.023036 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DN8 _struct.title ;STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DN8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DN8 _struct_ref.pdbx_db_accession 1DN8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DN8 A 1 ? 2 ? 1DN8 1 ? 2 ? 1 2 2 1 1DN8 B 1 ? 2 ? 1DN8 3 ? 4 ? 3 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 x-y,x,z+5/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 36.1750000000 3 'crystal symmetry operation' 2_555 -y,x-y,z+2/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 28.9400000000 4 'crystal symmetry operation' 4_555 -x,-y,z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 21.7050000000 5 'crystal symmetry operation' 3_555 -x+y,-x,z+1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14.4700000000 6 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 7.2350000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DT 1 B DG 4 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DT 1 O2 ? ? A DG 2 B DT 3 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DT 1 N3 ? ? A DG 2 B DT 3 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id NCO _struct_site.pdbx_auth_seq_id 5 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE NCO B 5' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DT A 1 ? DT A 1 . ? 1_565 ? 2 AC1 4 DT B 1 ? DT B 3 . ? 1_555 ? 3 AC1 4 DG B 2 ? DG B 4 . ? 1_555 ? 4 AC1 4 DG B 2 ? DG B 4 . ? 6_664 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 A DT 1 ? ? O6 B DG 4 ? ? 1.53 2 1 C4 A DT 1 ? ? O6 B DG 4 ? ? 2.07 3 1 N3 A DT 1 ? ? O6 B DG 4 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 P _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 DT _pdbx_validate_symm_contact.auth_seq_id_1 3 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O3'" _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 DG _pdbx_validate_symm_contact.auth_seq_id_2 4 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 1.66 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DT 1 ? ? OP2 A DT 1 ? ? 1.611 1.485 0.126 0.017 N 2 1 P A DT 1 ? ? "O5'" A DT 1 ? ? 1.733 1.593 0.140 0.010 N 3 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.519 1.593 -0.074 0.010 N 4 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.570 1.388 0.182 0.006 N 5 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.349 1.305 0.044 0.006 N 6 1 P B DG 4 ? ? "O5'" B DG 4 ? ? 1.688 1.593 0.095 0.010 N 7 1 C6 B DG 4 ? ? O6 B DG 4 ? ? 2.442 1.237 1.205 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DT 1 ? ? P A DT 1 ? ? OP2 A DT 1 ? ? 93.30 105.70 -12.40 0.90 N 2 1 "O5'" A DT 1 ? ? "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? 104.30 109.40 -5.10 0.80 N 3 1 P A DT 1 ? ? "O5'" A DT 1 ? ? "C5'" A DT 1 ? ? 101.31 120.90 -19.59 1.60 N 4 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? "C2'" A DT 1 ? ? 110.32 106.80 3.52 0.50 N 5 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 101.72 108.00 -6.28 0.70 N 6 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 120.57 115.20 5.37 0.60 N 7 1 C4 A DT 1 ? ? C5 A DT 1 ? ? C6 A DT 1 ? ? 114.14 118.00 -3.86 0.60 N 8 1 "C3'" A DT 1 ? ? "O3'" A DT 1 ? ? P A DG 2 ? ? 129.47 119.70 9.77 1.20 Y 9 1 "O3'" A DT 1 ? ? P A DG 2 ? ? "O5'" A DG 2 ? ? 115.43 104.00 11.43 1.90 Y 10 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 97.21 119.60 -22.39 1.50 N 11 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 128.16 110.70 17.46 1.20 N 12 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 104.25 109.40 -5.15 0.80 N 13 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.94 108.30 7.64 0.30 N 14 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 93.62 104.30 -10.68 0.50 N 15 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 121.47 113.10 8.37 0.50 N 16 1 "O5'" B DT 3 ? ? P B DT 3 ? ? OP2 B DT 3 ? ? 122.70 110.70 12.00 1.20 N 17 1 P B DT 3 ? ? "O5'" B DT 3 ? ? "C5'" B DT 3 ? ? 109.83 120.90 -11.07 1.60 N 18 1 "O4'" B DT 3 ? ? "C4'" B DT 3 ? ? "C3'" B DT 3 ? ? 112.03 106.00 6.03 0.60 N 19 1 "C4'" B DT 3 ? ? "C3'" B DT 3 ? ? "C2'" B DT 3 ? ? 96.17 102.20 -6.03 0.70 N 20 1 "O4'" B DT 3 ? ? "C1'" B DT 3 ? ? N1 B DT 3 ? ? 111.78 108.30 3.48 0.30 N 21 1 C2 B DT 3 ? ? N3 B DT 3 ? ? C4 B DT 3 ? ? 122.63 127.20 -4.57 0.60 N 22 1 N3 B DT 3 ? ? C4 B DT 3 ? ? C5 B DT 3 ? ? 120.37 115.20 5.17 0.60 N 23 1 C4 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 122.79 119.00 3.79 0.60 N 24 1 "O3'" B DT 3 ? ? P B DG 4 ? ? OP2 B DG 4 ? ? 86.66 105.20 -18.54 2.20 Y 25 1 "O3'" B DT 3 ? ? P B DG 4 ? ? OP1 B DG 4 ? ? 140.59 110.50 30.09 1.10 Y 26 1 "O5'" B DG 4 ? ? P B DG 4 ? ? OP1 B DG 4 ? ? 99.28 105.70 -6.42 0.90 N 27 1 "O5'" B DG 4 ? ? "C5'" B DG 4 ? ? "C4'" B DG 4 ? ? 99.75 109.40 -9.65 0.80 N 28 1 P B DG 4 ? ? "O5'" B DG 4 ? ? "C5'" B DG 4 ? ? 109.64 120.90 -11.26 1.60 N 29 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 111.46 108.30 3.16 0.30 N 30 1 N1 B DG 4 ? ? C6 B DG 4 ? ? O6 B DG 4 ? ? 76.88 119.90 -43.02 0.60 N 31 1 C5 B DG 4 ? ? C6 B DG 4 ? ? O6 B DG 4 ? ? 171.31 128.60 42.71 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 1 ? ? 'X-RAY DIFFRACTION' 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' '(CH3) ON THYMINE' TR isotropic 'X-RAY DIFFRACTION' '(NH2) ON ADENINE' TR isotropic 'X-RAY DIFFRACTION' 'PO4 5PRIME TO PY' TR isotropic 'X-RAY DIFFRACTION' '[CO(NH3)6]3+' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 1 ? 'X-RAY DIFFRACTION' 'ALL ATOMS' fix 'X-RAY DIFFRACTION' '(CH3) ON THYMINE' fix 'X-RAY DIFFRACTION' '(NH2) ON ADENINE' fix 'X-RAY DIFFRACTION' 'PO4 5PRIME TO PY' fix 'X-RAY DIFFRACTION' '[CO(NH3)6]3+' ref 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 NCO CO CO N N 74 NCO N1 N N N 75 NCO N2 N N N 76 NCO N3 N N N 77 NCO N4 N N N 78 NCO N5 N N N 79 NCO N6 N N N 80 NCO HN11 H N N 81 NCO HN12 H N N 82 NCO HN13 H N N 83 NCO HN21 H N N 84 NCO HN22 H N N 85 NCO HN23 H N N 86 NCO HN31 H N N 87 NCO HN32 H N N 88 NCO HN33 H N N 89 NCO HN41 H N N 90 NCO HN42 H N N 91 NCO HN43 H N N 92 NCO HN51 H N N 93 NCO HN52 H N N 94 NCO HN53 H N N 95 NCO HN61 H N N 96 NCO HN62 H N N 97 NCO HN63 H N N 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 NCO CO N1 sing N N 77 NCO CO N2 sing N N 78 NCO CO N3 sing N N 79 NCO CO N4 sing N N 80 NCO CO N5 sing N N 81 NCO CO N6 sing N N 82 NCO N1 HN11 sing N N 83 NCO N1 HN12 sing N N 84 NCO N1 HN13 sing N N 85 NCO N2 HN21 sing N N 86 NCO N2 HN22 sing N N 87 NCO N2 HN23 sing N N 88 NCO N3 HN31 sing N N 89 NCO N3 HN32 sing N N 90 NCO N3 HN33 sing N N 91 NCO N4 HN41 sing N N 92 NCO N4 HN42 sing N N 93 NCO N4 HN43 sing N N 94 NCO N5 HN51 sing N N 95 NCO N5 HN52 sing N N 96 NCO N5 HN53 sing N N 97 NCO N6 HN61 sing N N 98 NCO N6 HN62 sing N N 99 NCO N6 HN63 sing N N 100 # _ndb_struct_conf_na.entry_id 1DN8 _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DG 2 1_555 -0.155 -0.266 0.999 -1.456 -2.073 -0.671 1 A_DT1:DG4_B A 1 ? B 4 ? ? ? 1 A DG 2 1_555 B DT 1 1_555 0.761 -0.233 0.052 -11.154 3.696 5.008 2 A_DG2:DT3_B A 2 ? B 3 ? 28 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DT _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 B _ndb_struct_na_base_pair_step.j_label_comp_id_1 DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 2 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 2 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 B _ndb_struct_na_base_pair_step.j_label_comp_id_2 DT _ndb_struct_na_base_pair_step.j_label_seq_id_2 1 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift 0.200 _ndb_struct_na_base_pair_step.slide 4.941 _ndb_struct_na_base_pair_step.rise 4.022 _ndb_struct_na_base_pair_step.tilt 9.130 _ndb_struct_na_base_pair_step.roll 6.575 _ndb_struct_na_base_pair_step.twist -4.032 _ndb_struct_na_base_pair_step.x_displacement -28.693 _ndb_struct_na_base_pair_step.y_displacement 7.848 _ndb_struct_na_base_pair_step.helical_rise -1.511 _ndb_struct_na_base_pair_step.inclination -41.109 _ndb_struct_na_base_pair_step.tip 57.083 _ndb_struct_na_base_pair_step.helical_twist -11.949 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DT1DG2:DT3DG4_BB _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 B _ndb_struct_na_base_pair_step.j_auth_seq_id_1 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 B _ndb_struct_na_base_pair_step.j_auth_seq_id_2 3 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _atom_sites.entry_id 1DN8 _atom_sites.fract_transf_matrix[1][1] 0.055772 _atom_sites.fract_transf_matrix[1][2] 0.032200 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.064400 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023036 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 P P . DT A 1 1 ? 7.458 -3.104 0.069 0.83 14.00 ? 1 DT A P 1 ATOM 2 O OP1 . DT A 1 1 ? 8.198 -2.941 1.242 0.83 15.00 ? 1 DT A OP1 1 ATOM 3 O OP2 . DT A 1 1 ? 7.496 -4.408 -0.877 0.83 10.00 ? 1 DT A OP2 1 ATOM 4 O "O5'" . DT A 1 1 ? 5.741 -3.189 0.287 1.00 12.00 ? 1 DT A "O5'" 1 ATOM 5 C "C5'" . DT A 1 1 ? 5.651 -3.616 1.667 1.00 11.00 ? 1 DT A "C5'" 1 ATOM 6 C "C4'" . DT A 1 1 ? 4.238 -3.309 2.058 1.00 8.00 ? 1 DT A "C4'" 1 ATOM 7 O "O4'" . DT A 1 1 ? 3.990 -1.986 2.531 1.00 2.00 ? 1 DT A "O4'" 1 ATOM 8 C "C3'" . DT A 1 1 ? 3.289 -3.536 0.868 1.00 4.00 ? 1 DT A "C3'" 1 ATOM 9 O "O3'" . DT A 1 1 ? 2.097 -4.098 1.428 1.00 12.00 ? 1 DT A "O3'" 1 ATOM 10 C "C2'" . DT A 1 1 ? 2.963 -2.160 0.391 1.00 10.00 ? 1 DT A "C2'" 1 ATOM 11 C "C1'" . DT A 1 1 ? 2.958 -1.480 1.719 1.00 2.00 ? 1 DT A "C1'" 1 ATOM 12 N N1 . DT A 1 1 ? 3.339 -0.099 1.589 1.00 6.00 ? 1 DT A N1 1 ATOM 13 C C2 . DT A 1 1 ? 2.385 0.870 1.767 1.00 10.00 ? 1 DT A C2 1 ATOM 14 O O2 . DT A 1 1 ? 1.166 0.589 1.901 1.00 8.00 ? 1 DT A O2 1 ATOM 15 N N3 . DT A 1 1 ? 2.899 2.118 1.684 1.00 7.00 ? 1 DT A N3 1 ATOM 16 C C4 . DT A 1 1 ? 4.179 2.415 1.415 1.00 12.00 ? 1 DT A C4 1 ATOM 17 O O4 . DT A 1 1 ? 4.511 3.649 1.328 1.00 14.00 ? 1 DT A O4 1 ATOM 18 C C5 . DT A 1 1 ? 5.133 1.388 1.237 1.00 9.00 ? 1 DT A C5 1 ATOM 19 C C7 . DT A 1 1 ? 6.592 1.691 1.029 0.40 9.00 ? 1 DT A C7 1 ATOM 20 C C6 . DT A 1 1 ? 4.640 0.165 1.354 1.00 10.00 ? 1 DT A C6 1 ATOM 21 P P . DG A 1 2 ? 1.683 -5.632 1.606 1.00 18.00 ? 2 DG A P 1 ATOM 22 O OP1 . DG A 1 2 ? 1.426 -6.113 0.208 1.00 13.00 ? 2 DG A OP1 1 ATOM 23 O OP2 . DG A 1 2 ? 0.196 -5.256 1.962 1.00 15.00 ? 2 DG A OP2 1 ATOM 24 O "O5'" . DG A 1 2 ? 2.378 -6.368 2.739 1.00 7.00 ? 2 DG A "O5'" 1 ATOM 25 C "C5'" . DG A 1 2 ? 1.896 -6.234 4.133 1.00 9.00 ? 2 DG A "C5'" 1 ATOM 26 C "C4'" . DG A 1 2 ? 3.062 -6.711 4.979 1.00 8.00 ? 2 DG A "C4'" 1 ATOM 27 O "O4'" . DG A 1 2 ? 4.176 -6.149 4.337 1.00 10.00 ? 2 DG A "O4'" 1 ATOM 28 C "C3'" . DG A 1 2 ? 3.212 -6.300 6.425 1.00 9.00 ? 2 DG A "C3'" 1 ATOM 29 O "O3'" . DG A 1 2 ? 2.795 -7.211 7.462 1.00 14.00 ? 2 DG A "O3'" 1 ATOM 30 C "C2'" . DG A 1 2 ? 4.708 -6.132 6.633 1.00 11.00 ? 2 DG A "C2'" 1 ATOM 31 C "C1'" . DG A 1 2 ? 5.249 -5.880 5.227 1.00 14.00 ? 2 DG A "C1'" 1 ATOM 32 N N9 . DG A 1 2 ? 5.762 -4.514 5.214 1.00 15.00 ? 2 DG A N9 1 ATOM 33 C C8 . DG A 1 2 ? 7.067 -4.101 5.235 1.00 19.00 ? 2 DG A C8 1 ATOM 34 N N7 . DG A 1 2 ? 7.391 -2.792 5.283 1.00 21.00 ? 2 DG A N7 1 ATOM 35 C C5 . DG A 1 2 ? 5.894 -2.320 5.305 1.00 19.00 ? 2 DG A C5 1 ATOM 36 C C6 . DG A 1 2 ? 5.375 -0.992 5.331 1.00 21.00 ? 2 DG A C6 1 ATOM 37 O O6 . DG A 1 2 ? 5.989 0.090 5.378 1.00 18.00 ? 2 DG A O6 1 ATOM 38 N N1 . DG A 1 2 ? 3.997 -0.977 5.348 1.00 22.00 ? 2 DG A N1 1 ATOM 39 C C2 . DG A 1 2 ? 3.212 -2.085 5.331 1.00 18.00 ? 2 DG A C2 1 ATOM 40 N N2 . DG A 1 2 ? 1.899 -1.876 5.361 0.60 18.00 ? 2 DG A N2 1 ATOM 41 N N3 . DG A 1 2 ? 3.661 -3.326 5.296 1.00 18.00 ? 2 DG A N3 1 ATOM 42 C C4 . DG A 1 2 ? 5.002 -3.370 5.287 1.00 19.00 ? 2 DG A C4 1 ATOM 43 P P . DT B 1 1 ? 0.767 7.960 6.286 0.83 18.00 ? 3 DT B P 1 ATOM 44 O OP1 . DT B 1 1 ? 2.024 8.093 5.526 0.83 14.00 ? 3 DT B OP1 1 ATOM 45 O OP2 . DT B 1 1 ? -0.156 9.074 6.507 0.83 17.00 ? 3 DT B OP2 1 ATOM 46 O "O5'" . DT B 1 1 ? 0.263 6.470 5.882 1.00 21.00 ? 3 DT B "O5'" 1 ATOM 47 C "C5'" . DT B 1 1 ? -1.000 6.553 5.174 1.00 22.00 ? 3 DT B "C5'" 1 ATOM 48 C "C4'" . DT B 1 1 ? -1.373 5.144 4.723 1.00 15.00 ? 3 DT B "C4'" 1 ATOM 49 O "O4'" . DT B 1 1 ? -0.256 4.657 3.976 1.00 23.00 ? 3 DT B "O4'" 1 ATOM 50 C "C3'" . DT B 1 1 ? -1.667 4.281 5.934 1.00 12.00 ? 3 DT B "C3'" 1 ATOM 51 O "O3'" . DT B 1 1 ? -2.742 3.303 5.969 1.00 7.00 ? 3 DT B "O3'" 1 ATOM 52 C "C2'" . DT B 1 1 ? -0.275 3.613 6.004 1.00 8.00 ? 3 DT B "C2'" 1 ATOM 53 C "C1'" . DT B 1 1 ? 0.186 3.470 4.606 1.00 17.00 ? 3 DT B "C1'" 1 ATOM 54 N N1 . DT B 1 1 ? 1.655 3.373 4.619 1.00 25.00 ? 3 DT B N1 1 ATOM 55 C C2 . DT B 1 1 ? 2.205 2.109 4.884 1.00 26.00 ? 3 DT B C2 1 ATOM 56 O O2 . DT B 1 1 ? 1.471 1.129 5.079 1.00 24.00 ? 3 DT B O2 1 ATOM 57 N N3 . DT B 1 1 ? 3.551 2.036 4.944 1.00 23.00 ? 3 DT B N3 1 ATOM 58 C C4 . DT B 1 1 ? 4.348 3.118 4.788 1.00 25.00 ? 3 DT B C4 1 ATOM 59 O O4 . DT B 1 1 ? 5.590 2.946 4.845 1.00 28.00 ? 3 DT B O4 1 ATOM 60 C C5 . DT B 1 1 ? 3.785 4.391 4.549 1.00 25.00 ? 3 DT B C5 1 ATOM 61 C C7 . DT B 1 1 ? 4.620 5.626 4.345 0.40 26.00 ? 3 DT B C7 1 ATOM 62 C C6 . DT B 1 1 ? 2.443 4.464 4.493 1.00 25.00 ? 3 DT B C6 1 ATOM 63 P P . DG B 1 2 ? -4.259 3.815 5.960 1.00 8.00 ? 4 DG B P 1 ATOM 64 O OP1 . DG B 1 2 ? -5.174 4.576 6.755 1.00 11.00 ? 4 DG B OP1 1 ATOM 65 O OP2 . DG B 1 2 ? -4.585 2.581 5.357 1.00 10.00 ? 4 DG B OP2 1 ATOM 66 O "O5'" . DG B 1 2 ? -4.183 4.814 4.601 1.00 5.00 ? 4 DG B "O5'" 1 ATOM 67 C "C5'" . DG B 1 2 ? -4.872 4.161 3.464 1.00 3.00 ? 4 DG B "C5'" 1 ATOM 68 C "C4'" . DG B 1 2 ? -5.081 5.363 2.566 1.00 2.00 ? 4 DG B "C4'" 1 ATOM 69 O "O4'" . DG B 1 2 ? -3.982 6.211 2.783 1.00 2.00 ? 4 DG B "O4'" 1 ATOM 70 C "C3'" . DG B 1 2 ? -5.069 5.074 1.111 1.00 2.00 ? 4 DG B "C3'" 1 ATOM 71 O "O3'" . DG B 1 2 ? -6.430 4.835 0.695 1.00 15.00 ? 4 DG B "O3'" 1 ATOM 72 C "C2'" . DG B 1 2 ? -4.392 6.287 0.504 1.00 7.00 ? 4 DG B "C2'" 1 ATOM 73 C "C1'" . DG B 1 2 ? -3.566 6.897 1.615 1.00 7.00 ? 4 DG B "C1'" 1 ATOM 74 N N9 . DG B 1 2 ? -2.117 6.806 1.428 1.00 11.00 ? 4 DG B N9 1 ATOM 75 C C8 . DG B 1 2 ? -1.295 7.901 1.311 1.00 15.00 ? 4 DG B C8 1 ATOM 76 N N7 . DG B 1 2 ? -0.023 7.637 1.120 1.00 11.00 ? 4 DG B N7 1 ATOM 77 C C5 . DG B 1 2 ? -0.020 6.248 1.133 1.00 14.00 ? 4 DG B C5 1 ATOM 78 C C6 . DG B 1 2 ? 1.071 5.356 0.959 1.00 15.00 ? 4 DG B C6 1 ATOM 79 O O6 . DG B 1 2 ? 3.158 4.101 0.781 1.00 15.00 ? 4 DG B O6 1 ATOM 80 N N1 . DG B 1 2 ? 0.664 4.070 1.046 1.00 11.00 ? 4 DG B N1 1 ATOM 81 C C2 . DG B 1 2 ? -0.606 3.652 1.211 1.00 14.00 ? 4 DG B C2 1 ATOM 82 N N2 . DG B 1 2 ? -0.780 2.317 1.255 0.60 12.00 ? 4 DG B N2 1 ATOM 83 N N3 . DG B 1 2 ? -1.658 4.452 1.372 1.00 14.00 ? 4 DG B N3 1 ATOM 84 C C4 . DG B 1 2 ? -1.277 5.739 1.333 1.00 13.00 ? 4 DG B C4 1 HETATM 85 CO CO . NCO C 2 . ? 3.279 10.463 1.693 0.67 46.00 ? 5 NCO B CO 1 HETATM 86 N N1 . NCO C 2 . ? 3.157 12.256 2.531 1.00 42.00 ? 5 NCO B N1 1 HETATM 87 N N2 . NCO C 2 . ? 5.218 10.764 1.424 0.01 43.00 ? 5 NCO B N2 1 HETATM 88 N N3 . NCO C 2 . ? 3.518 8.609 0.964 1.00 42.00 ? 5 NCO B N3 1 HETATM 89 N N4 . NCO C 2 . ? 1.381 10.155 2.014 0.29 44.00 ? 5 NCO B N4 1 HETATM 90 N N5 . NCO C 2 . ? 3.693 9.722 3.499 0.01 43.00 ? 5 NCO B N5 1 HETATM 91 N N6 . NCO C 2 . ? 2.907 11.175 -0.056 0.01 43.00 ? 5 NCO B N6 1 #