data_1FDG # _entry.id 1FDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FDG pdb_00001fdg 10.2210/pdb1fdg/pdb NDB DD0029 ? ? RCSB RCSB011499 ? ? WWPDB D_1000011499 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1FD5 _pdbx_database_related.details 'Bisacridine/CGTACG complex in same crystal lattice' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FDG _pdbx_database_status.recvd_initial_deposition_date 2000-07-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, X.-L.' 1 'Robinson, H.' 2 'Gao, Y.-G.' 3 'Wang, A.H.-J.' 4 # _citation.id primary _citation.title 'Binding of a macrocyclic bisacridine and ametantrone to CGTACG involves similar unusual intercalation platforms.' _citation.journal_abbrev Biochemistry _citation.journal_volume 39 _citation.page_first 10950 _citation.page_last 10957 _citation.year 2000 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10998231 _citation.pdbx_database_id_DOI 10.1021/bi001319z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, X.L.' 1 ? primary 'Robinson, H.' 2 ? primary 'Gao, Y.G.' 3 ? primary 'Wang, A.H.' 4 ? # _cell.entry_id 1FDG _cell.length_a 29.094 _cell.length_b 52.714 _cell.length_c 40.183 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FDG _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') ; 1809.217 2 ? ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 3 non-polymer syn '1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE' 208.212 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'synthetic DNA moleclue' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1FDG _struct_ref.pdbx_db_accession 1FDG _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FDG A 1 ? 6 ? 1FDG 1 ? 6 ? 1 6 2 1 1FDG B 1 ? 6 ? 1FDG 7 ? 12 ? 7 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9TA non-polymer . '1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE' ? 'C14 H8 O2' 208.212 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 1FDG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.67 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;MPD, sodium cacodylate buffer, magnesium chloride, cobalt chloride, spermine, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1999-08-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength 0.7251 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FDG _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 80 _reflns.d_resolution_high 1.6 _reflns.number_obs 57036 _reflns.number_all 57036 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.0520000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.5 _reflns.B_iso_Wilson_estimate 28.3 _reflns.pdbx_redundancy 6.8 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.5230000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.number_unique_all 423 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1FDG _refine.ls_number_reflns_obs 3272 _refine.ls_number_reflns_all 4028 _refine.pdbx_ls_sigma_I 2 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2640000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2490000 _refine.ls_R_factor_R_free 0.3140000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 166 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'G.PARKINSON, J.VOJTECHOVSKY, L.CLOWNEY, A.T.BRUNGER, H.M.BERMAN' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 225 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 271 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 1.7 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1FDG _struct.title ;BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (AMETANTRONE COMPLEX) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FDG _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;High resolution crystal structure, intercalation platform, MAD, anticancer drug, drug-DNA complex, metal ions, tertiary base pairs, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 5 ? H N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 N7 ? ? ? 1_555 C CO . CO ? ? A DG 2 A CO 21 1_555 ? ? ? ? ? ? ? 2.203 ? ? metalc2 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 21 A HOH 123 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc3 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 21 A HOH 124 1_555 ? ? ? ? ? ? ? 1.995 ? ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 21 A HOH 125 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 21 A HOH 126 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 21 A HOH 127 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc7 metalc ? ? B DG 6 N7 ? ? ? 1_555 F CO . CO ? ? B DG 12 B CO 22 1_555 ? ? ? ? ? ? ? 2.159 ? ? metalc8 metalc ? ? F CO . CO ? ? ? 1_555 H HOH . O ? ? B CO 22 B HOH 121 1_555 ? ? ? ? ? ? ? 1.792 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B 9TA 13 ? 7 'BINDING SITE FOR RESIDUE 9TA B 13' AC2 Software B MG 23 ? 2 'BINDING SITE FOR RESIDUE MG B 23' AC3 Software B CO 22 ? 6 'BINDING SITE FOR RESIDUE CO B 22' AC4 Software A CO 21 ? 6 'BINDING SITE FOR RESIDUE CO A 21' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DC A 5 ? DC A 5 . ? 2_655 ? 2 AC1 7 DC A 5 ? DC A 5 . ? 1_555 ? 3 AC1 7 DG A 6 ? DG A 6 . ? 1_555 ? 4 AC1 7 DG A 6 ? DG A 6 . ? 2_655 ? 5 AC1 7 DG B 2 ? DG B 8 . ? 2_655 ? 6 AC1 7 DG B 2 ? DG B 8 . ? 1_555 ? 7 AC1 7 HOH H . ? HOH B 116 . ? 3_656 ? 8 AC2 2 DG B 2 ? DG B 8 . ? 4_556 ? 9 AC2 2 DG B 2 ? DG B 8 . ? 1_555 ? 10 AC3 6 DG B 6 ? DG B 12 . ? 1_555 ? 11 AC3 6 DG B 6 ? DG B 12 . ? 3_755 ? 12 AC3 6 HOH H . ? HOH B 121 . ? 1_555 ? 13 AC3 6 HOH H . ? HOH B 121 . ? 3_755 ? 14 AC3 6 HOH H . ? HOH B 122 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH B 122 . ? 3_755 ? 16 AC4 6 DG A 2 ? DG A 2 . ? 1_555 ? 17 AC4 6 HOH G . ? HOH A 123 . ? 1_555 ? 18 AC4 6 HOH G . ? HOH A 124 . ? 1_555 ? 19 AC4 6 HOH G . ? HOH A 125 . ? 1_555 ? 20 AC4 6 HOH G . ? HOH A 126 . ? 1_555 ? 21 AC4 6 HOH G . ? HOH A 127 . ? 1_555 ? # _database_PDB_matrix.entry_id 1FDG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1FDG _atom_sites.fract_transf_matrix[1][1] 0.034371 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018970 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024886 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O3'" . DC A 1 1 ? 15.763 16.988 15.586 1.00 46.78 ? 1 DC A "O3'" 1 ATOM 2 P P . DG A 1 2 ? 15.549 18.387 14.840 1.00 57.53 ? 2 DG A P 1 ATOM 3 O OP1 . DG A 1 2 ? 16.829 19.142 14.872 1.00 50.76 ? 2 DG A OP1 1 ATOM 4 O OP2 . DG A 1 2 ? 14.305 19.019 15.359 1.00 83.70 ? 2 DG A OP2 1 ATOM 5 O "O5'" . DG A 1 2 ? 15.290 18.023 13.308 1.00 51.42 ? 2 DG A "O5'" 1 ATOM 6 C "C5'" . DG A 1 2 ? 15.457 19.045 12.302 1.00 50.97 ? 2 DG A "C5'" 1 ATOM 7 C "C4'" . DG A 1 2 ? 15.095 18.523 10.934 1.00 45.36 ? 2 DG A "C4'" 1 ATOM 8 O "O4'" . DG A 1 2 ? 16.072 17.560 10.484 1.00 42.54 ? 2 DG A "O4'" 1 ATOM 9 C "C3'" . DG A 1 2 ? 13.746 17.805 10.876 1.00 40.22 ? 2 DG A "C3'" 1 ATOM 10 O "O3'" . DG A 1 2 ? 13.145 18.035 9.600 1.00 36.13 ? 2 DG A "O3'" 1 ATOM 11 C "C2'" . DG A 1 2 ? 14.135 16.352 11.035 1.00 37.97 ? 2 DG A "C2'" 1 ATOM 12 C "C1'" . DG A 1 2 ? 15.481 16.275 10.330 1.00 37.12 ? 2 DG A "C1'" 1 ATOM 13 N N9 . DG A 1 2 ? 16.390 15.297 10.936 1.00 26.55 ? 2 DG A N9 1 ATOM 14 C C8 . DG A 1 2 ? 16.728 15.240 12.270 1.00 23.41 ? 2 DG A C8 1 ATOM 15 N N7 . DG A 1 2 ? 17.720 14.422 12.503 1.00 23.46 ? 2 DG A N7 1 ATOM 16 C C5 . DG A 1 2 ? 18.109 13.955 11.252 1.00 22.91 ? 2 DG A C5 1 ATOM 17 C C6 . DG A 1 2 ? 19.165 13.091 10.882 1.00 19.68 ? 2 DG A C6 1 ATOM 18 O O6 . DG A 1 2 ? 20.051 12.579 11.580 1.00 21.81 ? 2 DG A O6 1 ATOM 19 N N1 . DG A 1 2 ? 19.254 12.935 9.492 1.00 19.72 ? 2 DG A N1 1 ATOM 20 C C2 . DG A 1 2 ? 18.374 13.507 8.608 1.00 20.64 ? 2 DG A C2 1 ATOM 21 N N2 . DG A 1 2 ? 18.546 13.230 7.289 1.00 15.38 ? 2 DG A N2 1 ATOM 22 N N3 . DG A 1 2 ? 17.365 14.281 8.952 1.00 19.36 ? 2 DG A N3 1 ATOM 23 C C4 . DG A 1 2 ? 17.285 14.479 10.285 1.00 23.44 ? 2 DG A C4 1 ATOM 24 P P . DT A 1 3 ? 11.577 17.846 9.357 1.00 39.61 ? 3 DT A P 1 ATOM 25 O OP1 . DT A 1 3 ? 11.130 19.041 8.598 1.00 46.96 ? 3 DT A OP1 1 ATOM 26 O OP2 . DT A 1 3 ? 10.919 17.404 10.604 1.00 39.97 ? 3 DT A OP2 1 ATOM 27 O "O5'" . DT A 1 3 ? 11.482 16.611 8.355 1.00 46.02 ? 3 DT A "O5'" 1 ATOM 28 C "C5'" . DT A 1 3 ? 11.993 15.332 8.751 1.00 37.93 ? 3 DT A "C5'" 1 ATOM 29 C "C4'" . DT A 1 3 ? 12.674 14.707 7.533 1.00 38.40 ? 3 DT A "C4'" 1 ATOM 30 O "O4'" . DT A 1 3 ? 13.933 14.140 7.964 1.00 26.54 ? 3 DT A "O4'" 1 ATOM 31 C "C3'" . DT A 1 3 ? 11.804 13.542 7.069 1.00 26.25 ? 3 DT A "C3'" 1 ATOM 32 O "O3'" . DT A 1 3 ? 11.723 13.462 5.650 1.00 28.94 ? 3 DT A "O3'" 1 ATOM 33 C "C2'" . DT A 1 3 ? 12.407 12.350 7.755 1.00 21.79 ? 3 DT A "C2'" 1 ATOM 34 C "C1'" . DT A 1 3 ? 13.875 12.726 7.817 1.00 23.96 ? 3 DT A "C1'" 1 ATOM 35 N N1 . DT A 1 3 ? 14.570 12.134 8.970 1.00 23.33 ? 3 DT A N1 1 ATOM 36 C C2 . DT A 1 3 ? 15.641 11.333 8.749 1.00 20.15 ? 3 DT A C2 1 ATOM 37 O O2 . DT A 1 3 ? 15.931 10.985 7.621 1.00 22.23 ? 3 DT A O2 1 ATOM 38 N N3 . DT A 1 3 ? 16.369 10.991 9.858 1.00 21.99 ? 3 DT A N3 1 ATOM 39 C C4 . DT A 1 3 ? 16.036 11.306 11.174 1.00 29.80 ? 3 DT A C4 1 ATOM 40 O O4 . DT A 1 3 ? 16.790 10.923 12.073 1.00 26.06 ? 3 DT A O4 1 ATOM 41 C C5 . DT A 1 3 ? 14.899 12.179 11.333 1.00 23.39 ? 3 DT A C5 1 ATOM 42 C C7 . DT A 1 3 ? 14.475 12.633 12.693 1.00 31.30 ? 3 DT A C7 1 ATOM 43 C C6 . DT A 1 3 ? 14.224 12.569 10.242 1.00 29.77 ? 3 DT A C6 1 ATOM 44 P P . DA A 1 4 ? 10.619 12.457 5.042 1.00 34.62 ? 4 DA A P 1 ATOM 45 O OP1 . DA A 1 4 ? 10.119 13.051 3.786 1.00 34.26 ? 4 DA A OP1 1 ATOM 46 O OP2 . DA A 1 4 ? 9.680 12.105 6.148 1.00 37.20 ? 4 DA A OP2 1 ATOM 47 O "O5'" . DA A 1 4 ? 11.423 11.148 4.658 1.00 34.49 ? 4 DA A "O5'" 1 ATOM 48 C "C5'" . DA A 1 4 ? 12.642 11.188 3.881 1.00 26.61 ? 4 DA A "C5'" 1 ATOM 49 C "C4'" . DA A 1 4 ? 13.185 9.757 3.856 1.00 26.57 ? 4 DA A "C4'" 1 ATOM 50 O "O4'" . DA A 1 4 ? 13.933 9.553 5.082 1.00 26.91 ? 4 DA A "O4'" 1 ATOM 51 C "C3'" . DA A 1 4 ? 12.034 8.751 3.894 1.00 28.38 ? 4 DA A "C3'" 1 ATOM 52 O "O3'" . DA A 1 4 ? 12.029 7.966 2.703 1.00 33.32 ? 4 DA A "O3'" 1 ATOM 53 C "C2'" . DA A 1 4 ? 12.247 7.925 5.137 1.00 25.21 ? 4 DA A "C2'" 1 ATOM 54 C "C1'" . DA A 1 4 ? 13.661 8.253 5.585 1.00 25.00 ? 4 DA A "C1'" 1 ATOM 55 N N9 . DA A 1 4 ? 13.838 8.283 7.048 1.00 22.59 ? 4 DA A N9 1 ATOM 56 C C8 . DA A 1 4 ? 13.047 8.943 7.947 1.00 24.80 ? 4 DA A C8 1 ATOM 57 N N7 . DA A 1 4 ? 13.493 8.887 9.174 1.00 21.83 ? 4 DA A N7 1 ATOM 58 C C5 . DA A 1 4 ? 14.646 8.124 9.062 1.00 22.82 ? 4 DA A C5 1 ATOM 59 C C6 . DA A 1 4 ? 15.534 7.608 10.022 1.00 26.82 ? 4 DA A C6 1 ATOM 60 N N6 . DA A 1 4 ? 15.466 7.965 11.313 1.00 25.19 ? 4 DA A N6 1 ATOM 61 N N1 . DA A 1 4 ? 16.542 6.819 9.611 1.00 22.31 ? 4 DA A N1 1 ATOM 62 C C2 . DA A 1 4 ? 16.629 6.489 8.311 1.00 20.34 ? 4 DA A C2 1 ATOM 63 N N3 . DA A 1 4 ? 15.815 6.874 7.348 1.00 20.94 ? 4 DA A N3 1 ATOM 64 C C4 . DA A 1 4 ? 14.834 7.684 7.765 1.00 22.83 ? 4 DA A C4 1 ATOM 65 P P . DC A 1 5 ? 10.817 6.942 2.390 1.00 38.05 ? 5 DC A P 1 ATOM 66 O OP1 . DC A 1 5 ? 10.816 6.690 0.925 1.00 61.08 ? 5 DC A OP1 1 ATOM 67 O OP2 . DC A 1 5 ? 9.593 7.389 3.076 1.00 52.89 ? 5 DC A OP2 1 ATOM 68 O "O5'" . DC A 1 5 ? 11.370 5.603 3.056 1.00 35.31 ? 5 DC A "O5'" 1 ATOM 69 C "C5'" . DC A 1 5 ? 12.797 5.384 3.036 1.00 30.61 ? 5 DC A "C5'" 1 ATOM 70 C "C4'" . DC A 1 5 ? 13.226 4.282 3.951 1.00 28.73 ? 5 DC A "C4'" 1 ATOM 71 O "O4'" . DC A 1 5 ? 13.713 4.752 5.215 1.00 31.00 ? 5 DC A "O4'" 1 ATOM 72 C "C3'" . DC A 1 5 ? 12.238 3.156 4.226 1.00 31.89 ? 5 DC A "C3'" 1 ATOM 73 O "O3'" . DC A 1 5 ? 12.848 1.963 3.685 1.00 47.85 ? 5 DC A "O3'" 1 ATOM 74 C "C2'" . DC A 1 5 ? 12.219 3.025 5.734 1.00 40.41 ? 5 DC A "C2'" 1 ATOM 75 C "C1'" . DC A 1 5 ? 13.479 3.740 6.196 1.00 39.78 ? 5 DC A "C1'" 1 ATOM 76 N N1 . DC A 1 5 ? 13.315 4.460 7.474 1.00 28.70 ? 5 DC A N1 1 ATOM 77 C C2 . DC A 1 5 ? 14.181 4.167 8.524 1.00 28.21 ? 5 DC A C2 1 ATOM 78 O O2 . DC A 1 5 ? 15.171 3.444 8.329 1.00 36.69 ? 5 DC A O2 1 ATOM 79 N N3 . DC A 1 5 ? 13.890 4.658 9.746 1.00 28.17 ? 5 DC A N3 1 ATOM 80 C C4 . DC A 1 5 ? 12.840 5.458 9.917 1.00 29.04 ? 5 DC A C4 1 ATOM 81 N N4 . DC A 1 5 ? 12.645 5.953 11.139 1.00 33.97 ? 5 DC A N4 1 ATOM 82 C C5 . DC A 1 5 ? 11.943 5.778 8.860 1.00 34.57 ? 5 DC A C5 1 ATOM 83 C C6 . DC A 1 5 ? 12.238 5.282 7.649 1.00 31.15 ? 5 DC A C6 1 ATOM 84 P P . DG A 1 6 ? 11.948 0.863 2.937 1.00 57.88 ? 6 DG A P 1 ATOM 85 O OP1 . DG A 1 6 ? 12.631 0.559 1.658 1.00 46.75 ? 6 DG A OP1 1 ATOM 86 O OP2 . DG A 1 6 ? 10.526 1.268 2.986 1.00 51.86 ? 6 DG A OP2 1 ATOM 87 O "O5'" . DG A 1 6 ? 12.100 -0.437 3.854 1.00 61.06 ? 6 DG A "O5'" 1 ATOM 88 C "C5'" . DG A 1 6 ? 12.436 -0.353 5.252 1.00 49.49 ? 6 DG A "C5'" 1 ATOM 89 C "C4'" . DG A 1 6 ? 12.070 -1.662 5.931 1.00 42.47 ? 6 DG A "C4'" 1 ATOM 90 O "O4'" . DG A 1 6 ? 11.408 -1.361 7.180 1.00 41.15 ? 6 DG A "O4'" 1 ATOM 91 C "C3'" . DG A 1 6 ? 11.027 -2.447 5.122 1.00 41.94 ? 6 DG A "C3'" 1 ATOM 92 O "O3'" . DG A 1 6 ? 11.713 -3.449 4.356 1.00 34.54 ? 6 DG A "O3'" 1 ATOM 93 C "C2'" . DG A 1 6 ? 10.166 -3.103 6.169 1.00 47.91 ? 6 DG A "C2'" 1 ATOM 94 C "C1'" . DG A 1 6 ? 10.356 -2.276 7.419 1.00 41.66 ? 6 DG A "C1'" 1 ATOM 95 N N9 . DG A 1 6 ? 9.184 -1.509 7.823 1.00 43.64 ? 6 DG A N9 1 ATOM 96 C C8 . DG A 1 6 ? 8.137 -1.169 6.998 1.00 53.51 ? 6 DG A C8 1 ATOM 97 N N7 . DG A 1 6 ? 7.339 -0.280 7.523 1.00 58.34 ? 6 DG A N7 1 ATOM 98 C C5 . DG A 1 6 ? 7.897 -0.010 8.767 1.00 54.86 ? 6 DG A C5 1 ATOM 99 C C6 . DG A 1 6 ? 7.466 0.883 9.782 1.00 54.31 ? 6 DG A C6 1 ATOM 100 O O6 . DG A 1 6 ? 6.506 1.665 9.775 1.00 51.77 ? 6 DG A O6 1 ATOM 101 N N1 . DG A 1 6 ? 8.322 0.866 10.879 1.00 56.44 ? 6 DG A N1 1 ATOM 102 C C2 . DG A 1 6 ? 9.440 0.074 10.991 1.00 55.35 ? 6 DG A C2 1 ATOM 103 N N2 . DG A 1 6 ? 10.113 0.210 12.147 1.00 42.35 ? 6 DG A N2 1 ATOM 104 N N3 . DG A 1 6 ? 9.846 -0.773 10.055 1.00 51.12 ? 6 DG A N3 1 ATOM 105 C C4 . DG A 1 6 ? 9.050 -0.745 8.961 1.00 50.70 ? 6 DG A C4 1 ATOM 106 O "O5'" . DC B 1 1 ? 23.506 2.546 19.758 1.00 60.76 ? 7 DC B "O5'" 1 ATOM 107 C "C5'" . DC B 1 1 ? 22.970 3.452 20.748 1.00 50.19 ? 7 DC B "C5'" 1 ATOM 108 C "C4'" . DC B 1 1 ? 21.772 2.803 21.413 1.00 46.70 ? 7 DC B "C4'" 1 ATOM 109 O "O4'" . DC B 1 1 ? 22.132 2.509 22.790 1.00 43.59 ? 7 DC B "O4'" 1 ATOM 110 C "C3'" . DC B 1 1 ? 20.541 3.710 21.465 1.00 44.45 ? 7 DC B "C3'" 1 ATOM 111 O "O3'" . DC B 1 1 ? 19.338 2.971 21.220 1.00 38.18 ? 7 DC B "O3'" 1 ATOM 112 C "C2'" . DC B 1 1 ? 20.536 4.183 22.912 1.00 43.92 ? 7 DC B "C2'" 1 ATOM 113 C "C1'" . DC B 1 1 ? 21.055 2.940 23.621 1.00 47.92 ? 7 DC B "C1'" 1 ATOM 114 N N1 . DC B 1 1 ? 21.540 3.145 24.989 1.00 55.89 ? 7 DC B N1 1 ATOM 115 C C2 . DC B 1 1 ? 20.933 2.451 26.041 1.00 52.33 ? 7 DC B C2 1 ATOM 116 O O2 . DC B 1 1 ? 20.066 1.607 25.775 1.00 38.19 ? 7 DC B O2 1 ATOM 117 N N3 . DC B 1 1 ? 21.320 2.694 27.315 1.00 61.62 ? 7 DC B N3 1 ATOM 118 C C4 . DC B 1 1 ? 22.239 3.626 27.571 1.00 69.15 ? 7 DC B C4 1 ATOM 119 N N4 . DC B 1 1 ? 22.565 3.876 28.841 1.00 73.20 ? 7 DC B N4 1 ATOM 120 C C5 . DC B 1 1 ? 22.872 4.350 26.519 1.00 70.22 ? 7 DC B C5 1 ATOM 121 C C6 . DC B 1 1 ? 22.497 4.083 25.262 1.00 63.16 ? 7 DC B C6 1 ATOM 122 P P . DG B 1 2 ? 18.616 3.070 19.779 1.00 50.55 ? 8 DG B P 1 ATOM 123 O OP1 . DG B 1 2 ? 18.411 4.503 19.469 1.00 56.10 ? 8 DG B OP1 1 ATOM 124 O OP2 . DG B 1 2 ? 17.494 2.106 19.757 1.00 43.02 ? 8 DG B OP2 1 ATOM 125 O "O5'" . DG B 1 2 ? 19.749 2.558 18.787 1.00 43.96 ? 8 DG B "O5'" 1 ATOM 126 C "C5'" . DG B 1 2 ? 20.052 1.152 18.705 1.00 45.71 ? 8 DG B "C5'" 1 ATOM 127 C "C4'" . DG B 1 2 ? 19.896 0.733 17.256 1.00 44.08 ? 8 DG B "C4'" 1 ATOM 128 O "O4'" . DG B 1 2 ? 18.495 0.879 16.888 1.00 45.10 ? 8 DG B "O4'" 1 ATOM 129 C "C3'" . DG B 1 2 ? 20.612 1.696 16.300 1.00 39.26 ? 8 DG B "C3'" 1 ATOM 130 O "O3'" . DG B 1 2 ? 21.957 1.233 16.082 1.00 44.57 ? 8 DG B "O3'" 1 ATOM 131 C "C2'" . DG B 1 2 ? 19.803 1.535 15.027 1.00 44.85 ? 8 DG B "C2'" 1 ATOM 132 C "C1'" . DG B 1 2 ? 18.425 1.103 15.482 1.00 37.60 ? 8 DG B "C1'" 1 ATOM 133 N N9 . DG B 1 2 ? 17.378 2.092 15.266 1.00 34.67 ? 8 DG B N9 1 ATOM 134 C C8 . DG B 1 2 ? 16.793 2.862 16.246 1.00 25.18 ? 8 DG B C8 1 ATOM 135 N N7 . DG B 1 2 ? 15.910 3.687 15.782 1.00 35.57 ? 8 DG B N7 1 ATOM 136 C C5 . DG B 1 2 ? 16.016 3.569 14.401 1.00 35.39 ? 8 DG B C5 1 ATOM 137 C C6 . DG B 1 2 ? 15.309 4.250 13.374 1.00 25.69 ? 8 DG B C6 1 ATOM 138 O O6 . DG B 1 2 ? 14.460 5.137 13.476 1.00 30.56 ? 8 DG B O6 1 ATOM 139 N N1 . DG B 1 2 ? 15.659 3.783 12.113 1.00 26.89 ? 8 DG B N1 1 ATOM 140 C C2 . DG B 1 2 ? 16.585 2.791 11.883 1.00 30.25 ? 8 DG B C2 1 ATOM 141 N N2 . DG B 1 2 ? 16.800 2.493 10.592 1.00 24.96 ? 8 DG B N2 1 ATOM 142 N N3 . DG B 1 2 ? 17.254 2.144 12.828 1.00 31.43 ? 8 DG B N3 1 ATOM 143 C C4 . DG B 1 2 ? 16.902 2.567 14.065 1.00 37.05 ? 8 DG B C4 1 ATOM 144 P P . DT B 1 3 ? 23.103 2.290 15.689 1.00 40.80 ? 9 DT B P 1 ATOM 145 O OP1 . DT B 1 3 ? 24.383 1.852 16.278 1.00 36.43 ? 9 DT B OP1 1 ATOM 146 O OP2 . DT B 1 3 ? 22.598 3.651 15.983 1.00 36.21 ? 9 DT B OP2 1 ATOM 147 O "O5'" . DT B 1 3 ? 23.234 2.126 14.115 1.00 50.61 ? 9 DT B "O5'" 1 ATOM 148 C "C5'" . DT B 1 3 ? 22.631 1.023 13.406 1.00 47.00 ? 9 DT B "C5'" 1 ATOM 149 C "C4'" . DT B 1 3 ? 22.578 1.423 11.943 1.00 43.82 ? 9 DT B "C4'" 1 ATOM 150 O "O4'" . DT B 1 3 ? 21.320 2.068 11.671 1.00 39.28 ? 9 DT B "O4'" 1 ATOM 151 C "C3'" . DT B 1 3 ? 23.660 2.449 11.590 1.00 44.70 ? 9 DT B "C3'" 1 ATOM 152 O "O3'" . DT B 1 3 ? 24.347 1.993 10.436 1.00 51.82 ? 9 DT B "O3'" 1 ATOM 153 C "C2'" . DT B 1 3 ? 22.922 3.740 11.348 1.00 37.28 ? 9 DT B "C2'" 1 ATOM 154 C "C1'" . DT B 1 3 ? 21.529 3.284 10.962 1.00 32.91 ? 9 DT B "C1'" 1 ATOM 155 N N1 . DT B 1 3 ? 20.477 4.210 11.428 1.00 28.92 ? 9 DT B N1 1 ATOM 156 C C2 . DT B 1 3 ? 19.533 4.669 10.558 1.00 34.98 ? 9 DT B C2 1 ATOM 157 O O2 . DT B 1 3 ? 19.509 4.453 9.349 1.00 30.37 ? 9 DT B O2 1 ATOM 158 N N3 . DT B 1 3 ? 18.527 5.384 11.162 1.00 25.20 ? 9 DT B N3 1 ATOM 159 C C4 . DT B 1 3 ? 18.434 5.748 12.493 1.00 29.23 ? 9 DT B C4 1 ATOM 160 O O4 . DT B 1 3 ? 17.540 6.494 12.880 1.00 24.27 ? 9 DT B O4 1 ATOM 161 C C5 . DT B 1 3 ? 19.487 5.247 13.342 1.00 29.74 ? 9 DT B C5 1 ATOM 162 C C7 . DT B 1 3 ? 19.435 5.531 14.810 1.00 28.10 ? 9 DT B C7 1 ATOM 163 C C6 . DT B 1 3 ? 20.438 4.502 12.773 1.00 29.69 ? 9 DT B C6 1 ATOM 164 P P . DA B 1 4 ? 25.273 2.862 9.473 1.00 45.26 ? 10 DA B P 1 ATOM 165 O OP1 . DA B 1 4 ? 25.840 1.896 8.493 1.00 46.68 ? 10 DA B OP1 1 ATOM 166 O OP2 . DA B 1 4 ? 26.141 3.786 10.222 1.00 41.45 ? 10 DA B OP2 1 ATOM 167 O "O5'" . DA B 1 4 ? 24.213 3.734 8.637 1.00 38.16 ? 10 DA B "O5'" 1 ATOM 168 C "C5'" . DA B 1 4 ? 23.614 3.059 7.500 1.00 29.80 ? 10 DA B "C5'" 1 ATOM 169 C "C4'" . DA B 1 4 ? 23.031 4.072 6.552 1.00 36.65 ? 10 DA B "C4'" 1 ATOM 170 O "O4'" . DA B 1 4 ? 21.941 4.801 7.144 1.00 39.54 ? 10 DA B "O4'" 1 ATOM 171 C "C3'" . DA B 1 4 ? 24.024 5.114 6.045 1.00 27.46 ? 10 DA B "C3'" 1 ATOM 172 O "O3'" . DA B 1 4 ? 23.789 5.289 4.635 1.00 37.45 ? 10 DA B "O3'" 1 ATOM 173 C "C2'" . DA B 1 4 ? 23.656 6.358 6.823 1.00 23.88 ? 10 DA B "C2'" 1 ATOM 174 C "C1'" . DA B 1 4 ? 22.149 6.203 6.991 1.00 31.17 ? 10 DA B "C1'" 1 ATOM 175 N N9 . DA B 1 4 ? 21.629 6.833 8.215 1.00 21.98 ? 10 DA B N9 1 ATOM 176 C C8 . DA B 1 4 ? 22.167 6.686 9.482 1.00 26.87 ? 10 DA B C8 1 ATOM 177 N N7 . DA B 1 4 ? 21.441 7.259 10.407 1.00 27.38 ? 10 DA B N7 1 ATOM 178 C C5 . DA B 1 4 ? 20.451 7.932 9.699 1.00 17.83 ? 10 DA B C5 1 ATOM 179 C C6 . DA B 1 4 ? 19.460 8.828 10.096 1.00 20.84 ? 10 DA B C6 1 ATOM 180 N N6 . DA B 1 4 ? 19.238 9.120 11.385 1.00 24.07 ? 10 DA B N6 1 ATOM 181 N N1 . DA B 1 4 ? 18.605 9.310 9.171 1.00 25.06 ? 10 DA B N1 1 ATOM 182 C C2 . DA B 1 4 ? 18.841 8.977 7.878 1.00 18.81 ? 10 DA B C2 1 ATOM 183 N N3 . DA B 1 4 ? 19.785 8.195 7.375 1.00 18.55 ? 10 DA B N3 1 ATOM 184 C C4 . DA B 1 4 ? 20.552 7.657 8.339 1.00 18.58 ? 10 DA B C4 1 ATOM 185 P P . DC B 1 5 ? 24.906 6.116 3.811 1.00 34.47 ? 11 DC B P 1 ATOM 186 O OP1 . DC B 1 5 ? 24.824 5.714 2.392 1.00 34.17 ? 11 DC B OP1 1 ATOM 187 O OP2 . DC B 1 5 ? 26.158 6.134 4.590 1.00 28.52 ? 11 DC B OP2 1 ATOM 188 O "O5'" . DC B 1 5 ? 24.304 7.603 3.851 1.00 32.34 ? 11 DC B "O5'" 1 ATOM 189 C "C5'" . DC B 1 5 ? 23.146 7.904 3.055 1.00 19.35 ? 11 DC B "C5'" 1 ATOM 190 C "C4'" . DC B 1 5 ? 22.780 9.338 3.356 1.00 20.32 ? 11 DC B "C4'" 1 ATOM 191 O "O4'" . DC B 1 5 ? 22.363 9.435 4.742 1.00 19.10 ? 11 DC B "O4'" 1 ATOM 192 C "C3'" . DC B 1 5 ? 23.952 10.330 3.197 1.00 17.79 ? 11 DC B "C3'" 1 ATOM 193 O "O3'" . DC B 1 5 ? 23.377 11.445 2.459 1.00 21.56 ? 11 DC B "O3'" 1 ATOM 194 C "C2'" . DC B 1 5 ? 24.198 10.835 4.629 1.00 21.27 ? 11 DC B "C2'" 1 ATOM 195 C "C1'" . DC B 1 5 ? 22.800 10.707 5.208 1.00 20.04 ? 11 DC B "C1'" 1 ATOM 196 N N1 . DC B 1 5 ? 22.688 10.710 6.680 1.00 16.14 ? 11 DC B N1 1 ATOM 197 C C2 . DC B 1 5 ? 21.588 11.335 7.221 1.00 13.00 ? 11 DC B C2 1 ATOM 198 O O2 . DC B 1 5 ? 20.722 11.895 6.524 1.00 17.44 ? 11 DC B O2 1 ATOM 199 N N3 . DC B 1 5 ? 21.463 11.378 8.588 1.00 19.01 ? 11 DC B N3 1 ATOM 200 C C4 . DC B 1 5 ? 22.360 10.735 9.330 1.00 19.69 ? 11 DC B C4 1 ATOM 201 N N4 . DC B 1 5 ? 22.194 10.777 10.665 1.00 17.42 ? 11 DC B N4 1 ATOM 202 C C5 . DC B 1 5 ? 23.460 10.021 8.780 1.00 26.17 ? 11 DC B C5 1 ATOM 203 C C6 . DC B 1 5 ? 23.609 10.058 7.444 1.00 24.28 ? 11 DC B C6 1 ATOM 204 P P . DG B 1 6 ? 24.368 12.319 1.538 1.00 19.57 ? 12 DG B P 1 ATOM 205 O OP1 . DG B 1 6 ? 23.524 13.062 0.596 1.00 19.91 ? 12 DG B OP1 1 ATOM 206 O OP2 . DG B 1 6 ? 25.566 11.547 1.206 1.00 16.33 ? 12 DG B OP2 1 ATOM 207 O "O5'" . DG B 1 6 ? 24.850 13.480 2.570 1.00 18.67 ? 12 DG B "O5'" 1 ATOM 208 C "C5'" . DG B 1 6 ? 23.854 14.233 3.289 1.00 19.97 ? 12 DG B "C5'" 1 ATOM 209 C "C4'" . DG B 1 6 ? 24.563 15.342 4.071 1.00 19.34 ? 12 DG B "C4'" 1 ATOM 210 O "O4'" . DG B 1 6 ? 25.571 14.717 4.888 1.00 13.09 ? 12 DG B "O4'" 1 ATOM 211 C "C3'" . DG B 1 6 ? 25.377 16.252 3.132 1.00 19.44 ? 12 DG B "C3'" 1 ATOM 212 O "O3'" . DG B 1 6 ? 24.664 17.448 2.839 1.00 24.52 ? 12 DG B "O3'" 1 ATOM 213 C "C2'" . DG B 1 6 ? 26.644 16.527 3.915 1.00 23.57 ? 12 DG B "C2'" 1 ATOM 214 C "C1'" . DG B 1 6 ? 26.859 15.199 4.645 1.00 13.76 ? 12 DG B "C1'" 1 ATOM 215 N N9 . DG B 1 6 ? 27.553 14.180 3.831 1.00 22.38 ? 12 DG B N9 1 ATOM 216 C C8 . DG B 1 6 ? 27.928 14.256 2.506 1.00 26.17 ? 12 DG B C8 1 ATOM 217 N N7 . DG B 1 6 ? 28.292 13.095 2.004 1.00 18.87 ? 12 DG B N7 1 ATOM 218 C C5 . DG B 1 6 ? 28.090 12.192 3.056 1.00 24.85 ? 12 DG B C5 1 ATOM 219 C C6 . DG B 1 6 ? 28.383 10.816 3.178 1.00 26.07 ? 12 DG B C6 1 ATOM 220 O O6 . DG B 1 6 ? 28.757 9.984 2.354 1.00 22.43 ? 12 DG B O6 1 ATOM 221 N N1 . DG B 1 6 ? 28.020 10.288 4.417 1.00 28.30 ? 12 DG B N1 1 ATOM 222 C C2 . DG B 1 6 ? 27.546 11.023 5.470 1.00 22.11 ? 12 DG B C2 1 ATOM 223 N N2 . DG B 1 6 ? 27.310 10.305 6.574 1.00 20.65 ? 12 DG B N2 1 ATOM 224 N N3 . DG B 1 6 ? 27.369 12.321 5.391 1.00 18.08 ? 12 DG B N3 1 ATOM 225 C C4 . DG B 1 6 ? 27.657 12.850 4.186 1.00 18.74 ? 12 DG B C4 1 HETATM 226 CO CO . CO C 2 . ? 18.461 14.221 14.568 1.00 35.27 ? 21 CO A CO 1 HETATM 227 C C1 . 9TA D 3 . ? 13.610 1.040 15.150 0.50 43.44 ? 13 9TA B C1 1 HETATM 228 C C2 . 9TA D 3 . ? 14.093 0.476 16.328 0.50 43.14 ? 13 9TA B C2 1 HETATM 229 C C3 . 9TA D 3 . ? 14.999 -0.579 16.273 0.50 43.60 ? 13 9TA B C3 1 HETATM 230 C C4 . 9TA D 3 . ? 15.428 -1.064 15.041 0.50 43.90 ? 13 9TA B C4 1 HETATM 231 C C5 . 9TA D 3 . ? 15.290 -0.925 10.084 0.50 41.80 ? 13 9TA B C5 1 HETATM 232 C C6 . 9TA D 3 . ? 14.821 -0.354 8.906 0.50 34.55 ? 13 9TA B C6 1 HETATM 233 C C7 . 9TA D 3 . ? 13.903 0.687 8.962 0.50 36.31 ? 13 9TA B C7 1 HETATM 234 C C8 . 9TA D 3 . ? 13.494 1.194 10.193 0.50 40.53 ? 13 9TA B C8 1 HETATM 235 C C9 . 9TA D 3 . ? 13.533 1.156 12.674 0.50 39.39 ? 13 9TA B C9 1 HETATM 236 O O9 . 9TA D 3 . ? 12.709 2.083 12.719 0.50 38.63 ? 13 9TA B O9 1 HETATM 237 C C10 . 9TA D 3 . ? 15.374 -1.034 12.561 0.50 40.13 ? 13 9TA B C10 1 HETATM 238 O O10 . 9TA D 3 . ? 16.192 -1.965 12.508 0.50 39.85 ? 13 9TA B O10 1 HETATM 239 C C11 . 9TA D 3 . ? 14.026 0.545 13.918 0.50 39.81 ? 13 9TA B C11 1 HETATM 240 C C12 . 9TA D 3 . ? 14.944 -0.503 13.863 0.50 40.21 ? 13 9TA B C12 1 HETATM 241 C C13 . 9TA D 3 . ? 13.978 0.634 11.373 0.50 40.60 ? 13 9TA B C13 1 HETATM 242 C C14 . 9TA D 3 . ? 14.868 -0.436 11.318 0.50 41.86 ? 13 9TA B C14 1 HETATM 243 MG MG . MG E 4 . ? 16.037 0.000 20.091 0.50 68.48 ? 23 MG B MG 1 HETATM 244 CO CO . CO F 2 . ? 29.094 13.093 0.000 0.50 20.53 ? 22 CO B CO 1 HETATM 245 O O . HOH G 5 . ? 19.547 17.508 12.327 1.00 28.62 ? 101 HOH A O 1 HETATM 246 O O . HOH G 5 . ? 12.015 15.159 2.755 1.00 38.93 ? 104 HOH A O 1 HETATM 247 O O . HOH G 5 . ? 16.157 10.198 14.469 1.00 41.00 ? 105 HOH A O 1 HETATM 248 O O . HOH G 5 . ? 21.755 18.584 13.030 1.00 28.87 ? 107 HOH A O 1 HETATM 249 O O . HOH G 5 . ? 11.998 9.668 11.458 1.00 40.41 ? 108 HOH A O 1 HETATM 250 O O . HOH G 5 . ? 9.877 2.766 8.316 1.00 49.28 ? 109 HOH A O 1 HETATM 251 O O . HOH G 5 . ? 10.534 4.560 -0.576 1.00 49.53 ? 113 HOH A O 1 HETATM 252 O O . HOH G 5 . ? 14.840 12.711 16.295 1.00 46.05 ? 114 HOH A O 1 HETATM 253 O O . HOH G 5 . ? 10.895 13.977 10.937 1.00 43.92 ? 119 HOH A O 1 HETATM 254 O O . HOH G 5 . ? 4.724 -0.085 6.786 1.00 70.39 ? 120 HOH A O 1 HETATM 255 O O . HOH G 5 . ? 18.866 16.167 14.535 1.00 28.66 ? 123 HOH A O 1 HETATM 256 O O . HOH G 5 . ? 20.319 13.821 13.960 1.00 35.55 ? 124 HOH A O 1 HETATM 257 O O . HOH G 5 . ? 16.600 14.632 15.177 1.00 34.29 ? 125 HOH A O 1 HETATM 258 O O . HOH G 5 . ? 18.035 12.273 14.547 1.00 39.30 ? 126 HOH A O 1 HETATM 259 O O . HOH G 5 . ? 19.049 14.100 16.472 1.00 157.91 ? 127 HOH A O 1 HETATM 260 O O . HOH H 5 . ? 24.263 18.934 4.925 1.00 25.23 ? 102 HOH B O 1 HETATM 261 O O . HOH H 5 . ? 21.753 11.167 -0.339 1.00 42.65 ? 103 HOH B O 1 HETATM 262 O O . HOH H 5 . ? 27.039 20.024 4.937 1.00 29.25 ? 106 HOH B O 1 HETATM 263 O O . HOH H 5 . ? 25.657 9.395 0.270 1.00 42.36 ? 110 HOH B O 1 HETATM 264 O O . HOH H 5 . ? 28.557 7.620 5.186 1.00 55.28 ? 111 HOH B O 1 HETATM 265 O O . HOH H 5 . ? 23.210 20.745 3.470 1.00 33.71 ? 112 HOH B O 1 HETATM 266 O O . HOH H 5 . ? 30.113 17.823 -0.486 1.00 61.78 ? 115 HOH B O 1 HETATM 267 O O . HOH H 5 . ? 18.598 4.085 27.217 1.00 64.63 ? 116 HOH B O 1 HETATM 268 O O . HOH H 5 . ? 26.804 7.652 7.912 1.00 51.64 ? 117 HOH B O 1 HETATM 269 O O . HOH H 5 . ? 17.190 8.152 15.378 1.00 59.16 ? 118 HOH B O 1 HETATM 270 O O . HOH H 5 . ? 30.141 14.470 0.467 1.00 25.76 ? 121 HOH B O 1 HETATM 271 O O . HOH H 5 . ? 30.275 12.298 0.331 1.00 24.48 ? 122 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO 1 21 21 CO CO5 A . D 3 9TA 1 13 13 9TA TMR B . E 4 MG 1 23 23 MG MG2 B . F 2 CO 1 22 22 CO NCO B . G 5 HOH 1 101 101 HOH HOH A . G 5 HOH 2 104 104 HOH HOH A . G 5 HOH 3 105 105 HOH HOH A . G 5 HOH 4 107 107 HOH HOH A . G 5 HOH 5 108 108 HOH HOH A . G 5 HOH 6 109 109 HOH HOH A . G 5 HOH 7 113 113 HOH HOH A . G 5 HOH 8 114 114 HOH HOH A . G 5 HOH 9 119 119 HOH HOH A . G 5 HOH 10 120 120 HOH HOH A . G 5 HOH 11 123 21 HOH CO5 A . G 5 HOH 12 124 21 HOH CO5 A . G 5 HOH 13 125 21 HOH CO5 A . G 5 HOH 14 126 21 HOH CO5 A . G 5 HOH 15 127 21 HOH CO5 A . H 5 HOH 1 102 102 HOH HOH B . H 5 HOH 2 103 103 HOH HOH B . H 5 HOH 3 106 106 HOH HOH B . H 5 HOH 4 110 110 HOH HOH B . H 5 HOH 5 111 111 HOH HOH B . H 5 HOH 6 112 112 HOH HOH B . H 5 HOH 7 115 115 HOH HOH B . H 5 HOH 8 116 116 HOH HOH B . H 5 HOH 9 117 117 HOH HOH B . H 5 HOH 10 118 118 HOH HOH B . H 5 HOH 11 121 22 HOH NCO B . H 5 HOH 12 122 22 HOH NCO B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B MG 23 ? E MG . 2 1 B CO 22 ? F CO . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 123 ? 1_555 87.9 ? 2 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 124 ? 1_555 92.6 ? 3 O ? G HOH . ? A HOH 123 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 124 ? 1_555 90.1 ? 4 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 125 ? 1_555 87.3 ? 5 O ? G HOH . ? A HOH 123 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 125 ? 1_555 89.6 ? 6 O ? G HOH . ? A HOH 124 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 125 ? 1_555 179.7 ? 7 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 126 ? 1_555 90.4 ? 8 O ? G HOH . ? A HOH 123 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 126 ? 1_555 178.3 ? 9 O ? G HOH . ? A HOH 124 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 126 ? 1_555 90.0 ? 10 O ? G HOH . ? A HOH 125 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 126 ? 1_555 90.3 ? 11 N7 ? A DG 2 ? A DG 2 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 127 ? 1_555 176.9 ? 12 O ? G HOH . ? A HOH 123 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 127 ? 1_555 90.9 ? 13 O ? G HOH . ? A HOH 124 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 127 ? 1_555 90.2 ? 14 O ? G HOH . ? A HOH 125 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 127 ? 1_555 89.8 ? 15 O ? G HOH . ? A HOH 126 ? 1_555 CO ? C CO . ? A CO 21 ? 1_555 O ? G HOH . ? A HOH 127 ? 1_555 90.8 ? 16 N7 ? B DG 6 ? B DG 12 ? 1_555 CO ? F CO . ? B CO 22 ? 1_555 O ? H HOH . ? B HOH 121 ? 1_555 88.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-07 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-09-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_entity_src_syn 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 d*TREK 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CO B CO 22 ? ? O B HOH 122 ? ? 1.46 2 1 O B HOH 121 ? ? O B HOH 122 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A DA 4 ? ? N3 A DA 4 ? ? C4 A DA 4 ? ? 113.68 110.60 3.08 0.50 N 2 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.71 118.90 3.81 0.60 N 3 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 114.73 119.90 -5.17 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.068 'SIDE CHAIN' 2 1 DG A 6 ? ? 0.059 'SIDE CHAIN' 3 1 DG B 12 ? ? 0.050 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'" 2 1 Y 1 A DC 1 ? "C5'" ? A DC 1 "C5'" 3 1 Y 1 A DC 1 ? "C4'" ? A DC 1 "C4'" 4 1 Y 1 A DC 1 ? "O4'" ? A DC 1 "O4'" 5 1 Y 1 A DC 1 ? "C3'" ? A DC 1 "C3'" 6 1 Y 1 A DC 1 ? "C2'" ? A DC 1 "C2'" 7 1 Y 1 A DC 1 ? "C1'" ? A DC 1 "C1'" 8 1 Y 1 A DC 1 ? N1 ? A DC 1 N1 9 1 Y 1 A DC 1 ? C2 ? A DC 1 C2 10 1 Y 1 A DC 1 ? O2 ? A DC 1 O2 11 1 Y 1 A DC 1 ? N3 ? A DC 1 N3 12 1 Y 1 A DC 1 ? C4 ? A DC 1 C4 13 1 Y 1 A DC 1 ? N4 ? A DC 1 N4 14 1 Y 1 A DC 1 ? C5 ? A DC 1 C5 15 1 Y 1 A DC 1 ? C6 ? A DC 1 C6 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1FDG 'double helix' 1FDG 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 5 1_555 -0.328 -0.142 -0.128 -8.667 4.576 2.134 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 0.209 -0.057 0.082 1.843 -0.724 2.866 2 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 3 1_555 0.388 -0.080 -0.358 -2.735 0.947 -0.944 3 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.177 0.077 0.026 14.681 -5.606 -0.544 4 A_DC5:DG8_B A 5 ? B 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -0.093 -0.317 3.141 -2.645 4.145 27.423 -1.604 -0.411 3.056 8.655 5.524 27.852 1 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.200 -0.330 3.382 3.548 2.915 35.711 -0.960 0.842 3.312 4.729 -5.756 35.995 2 AA_DT3DA4:DT9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 0.847 -0.839 2.939 -6.244 3.412 27.606 -2.372 -2.942 2.569 7.004 12.817 28.491 3 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 '1,4-BIS-[2-(2-HYDROXY-ETHYLAMINO)-ETHYLAMINO]-ANTHRAQUINONE' 9TA 4 'MAGNESIUM ION' MG 5 water HOH #