data_1KFO # _entry.id 1KFO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1KFO NDB AR0039 RCSB RCSB014906 WWPDB D_1000014906 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1KFO _pdbx_database_status.recvd_initial_deposition_date 2001-11-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lima, S.' 1 'Hildenbrand, J.' 2 'Korostelev, A.' 3 'Hattman, S.' 4 'Li, H.' 5 # _citation.id primary _citation.title 'Crystal structure of an RNA helix recognized by a zinc-finger protein: an 18-bp duplex at 1.6 A resolution.' _citation.journal_abbrev RNA _citation.journal_volume 8 _citation.page_first 924 _citation.page_last 932 _citation.year 2002 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12166647 _citation.pdbx_database_id_DOI 10.1017/S1355838202028893 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lima, S.' 1 primary 'Hildenbrand, J.' 2 primary 'Korostelev, A.' 3 primary 'Hattman, S.' 4 primary 'Li, H.' 5 # _cell.entry_id 1KFO _cell.length_a 45.336 _cell.length_b 45.336 _cell.length_c 95.129 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KFO _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP*AP*(5BU)P*CP*CP*C)-3'" 6131.561 1 ? ? ? ? 2 water nat water 18.015 38 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GAAUGCCUGCGAGCA(5BU)CCC' _entity_poly.pdbx_seq_one_letter_code_can GAAUGCCUGCGAGCAUCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 1 4 U n 1 5 G n 1 6 C n 1 7 C n 1 8 U n 1 9 G n 1 10 C n 1 11 G n 1 12 A n 1 13 G n 1 14 C n 1 15 A n 1 16 5BU n 1 17 C n 1 18 C n 1 19 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1KFO _struct_ref.pdbx_db_accession 1KFO _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1KFO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1KFO _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 1KFO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.55 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1KFO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 16.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1KFO _refine.ls_number_reflns_obs 13798 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 635784.22 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_d_res_low 16.69 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 95.4 _refine.ls_R_factor_obs 0.26 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.26 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1346 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 28.8 _refine.aniso_B[1][1] 2.94 _refine.aniso_B[2][2] 2.94 _refine.aniso_B[3][3] -5.88 _refine.aniso_B[1][2] 1.92 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.456314 _refine.solvent_model_param_bsol 42.3081 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1KFO _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.07 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.10 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 400 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 439 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 16.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 6.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.25 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 1968 _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.percent_reflns_obs 90.8 _refine_ls_shell.R_factor_R_free 0.317 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 9.8 _refine_ls_shell.number_reflns_R_free 215 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM ? 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1KFO _struct.title 'CRYSTAL STRUCTURE OF AN RNA HELIX RECOGNIZED BY A ZINC-FINGER PROTEIN: AN 18 BASE PAIR DUPLEX AT 1.6 RESOLUTION' _struct.pdbx_descriptor "5'-R(*GP*AP*AP*UP*GP*CP*CP*UP*GP*CP*GP*AP*GP*CP*AP*(5BU)P*CP*CP*C)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1KFO _struct_keywords.pdbx_keywords RNA _struct_keywords.text RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A A 15 "O3'" ? ? ? 1_555 A 5BU 16 P ? ? A A 15 A 5BU 16 1_555 ? ? ? ? ? ? ? 1.615 ? covale2 covale ? ? A 5BU 16 "O3'" ? ? ? 1_555 A C 17 P ? ? A 5BU 16 A C 17 1_555 ? ? ? ? ? ? ? 1.611 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 1 A C 18 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 1 A C 18 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 1 A C 18 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A A 2 N6 ? ? ? 1_555 A C 17 N3 ? ? A A 2 A C 17 7_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 A 5BU 16 N3 ? ? A A 3 A 5BU 16 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A A 3 N6 ? ? ? 1_555 A 5BU 16 O4 ? ? A A 3 A 5BU 16 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 15 N1 ? ? A U 4 A A 15 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 15 N6 ? ? A U 4 A A 15 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 5 A C 14 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 5 A C 14 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 5 A C 14 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 6 A G 13 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 6 A G 13 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 6 A G 13 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 A A 12 N6 ? ? A C 7 A A 12 7_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 A G 11 O6 ? ? A U 8 A G 11 7_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog17 hydrog ? ? A U 8 O2 ? ? ? 1_555 A G 11 N1 ? ? A U 8 A G 11 7_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog18 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 10 N3 ? ? A G 9 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 10 O2 ? ? A G 9 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 10 N4 ? ? A G 9 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 9 N1 ? ? A C 10 A G 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 9 O6 ? ? A C 10 A G 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 9 N2 ? ? A C 10 A G 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 8 O2 ? ? A G 11 A U 8 7_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog25 hydrog ? ? A G 11 O6 ? ? ? 1_555 A U 8 N3 ? ? A G 11 A U 8 7_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog26 hydrog ? ? A A 12 N6 ? ? ? 1_555 A C 7 N3 ? ? A A 12 A C 7 7_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 6 N3 ? ? A G 13 A C 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 6 O2 ? ? A G 13 A C 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 6 N4 ? ? A G 13 A C 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 5 N1 ? ? A C 14 A G 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 5 O6 ? ? A C 14 A G 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 5 N2 ? ? A C 14 A G 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 4 N3 ? ? A A 15 A U 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 4 O4 ? ? A A 15 A U 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A 5BU 16 N3 ? ? ? 1_555 A A 3 N1 ? ? A 5BU 16 A A 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A 5BU 16 O4 ? ? ? 1_555 A A 3 N6 ? ? A 5BU 16 A A 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A C 17 N3 ? ? ? 1_555 A A 2 N6 ? ? A C 17 A A 2 7_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog38 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 1 N1 ? ? A C 18 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 1 O6 ? ? A C 18 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 1 N2 ? ? A C 18 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1KFO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1KFO _atom_sites.fract_transf_matrix[1][1] 0.022058 _atom_sites.fract_transf_matrix[1][2] 0.012735 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025470 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010512 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . G A 1 1 ? 29.129 -3.366 19.403 1.00 41.86 ? 1 G A "O5'" 1 ATOM 2 C "C5'" . G A 1 1 ? 27.773 -3.523 18.978 1.00 39.89 ? 1 G A "C5'" 1 ATOM 3 C "C4'" . G A 1 1 ? 27.128 -4.789 19.488 1.00 39.43 ? 1 G A "C4'" 1 ATOM 4 O "O4'" . G A 1 1 ? 26.841 -4.647 20.904 1.00 37.71 ? 1 G A "O4'" 1 ATOM 5 C "C3'" . G A 1 1 ? 25.791 -5.146 18.863 1.00 39.78 ? 1 G A "C3'" 1 ATOM 6 O "O3'" . G A 1 1 ? 25.952 -5.826 17.620 1.00 41.90 ? 1 G A "O3'" 1 ATOM 7 C "C2'" . G A 1 1 ? 25.155 -6.008 19.945 1.00 39.18 ? 1 G A "C2'" 1 ATOM 8 O "O2'" . G A 1 1 ? 25.626 -7.339 19.971 1.00 39.79 ? 1 G A "O2'" 1 ATOM 9 C "C1'" . G A 1 1 ? 25.605 -5.269 21.206 1.00 36.74 ? 1 G A "C1'" 1 ATOM 10 N N9 . G A 1 1 ? 24.656 -4.208 21.512 1.00 32.05 ? 1 G A N9 1 ATOM 11 C C8 . G A 1 1 ? 24.886 -2.855 21.458 1.00 32.20 ? 1 G A C8 1 ATOM 12 N N7 . G A 1 1 ? 23.832 -2.144 21.749 1.00 31.22 ? 1 G A N7 1 ATOM 13 C C5 . G A 1 1 ? 22.850 -3.088 22.024 1.00 30.72 ? 1 G A C5 1 ATOM 14 C C6 . G A 1 1 ? 21.497 -2.920 22.405 1.00 30.24 ? 1 G A C6 1 ATOM 15 O O6 . G A 1 1 ? 20.873 -1.869 22.587 1.00 31.21 ? 1 G A O6 1 ATOM 16 N N1 . G A 1 1 ? 20.858 -4.145 22.578 1.00 31.96 ? 1 G A N1 1 ATOM 17 C C2 . G A 1 1 ? 21.445 -5.375 22.406 1.00 29.89 ? 1 G A C2 1 ATOM 18 N N2 . G A 1 1 ? 20.661 -6.438 22.621 1.00 32.26 ? 1 G A N2 1 ATOM 19 N N3 . G A 1 1 ? 22.705 -5.546 22.052 1.00 31.09 ? 1 G A N3 1 ATOM 20 C C4 . G A 1 1 ? 23.346 -4.366 21.882 1.00 30.68 ? 1 G A C4 1 ATOM 21 P P . A A 1 2 ? 24.793 -5.730 16.506 1.00 40.97 ? 2 A A P 1 ATOM 22 O OP1 . A A 1 2 ? 25.231 -6.476 15.298 1.00 44.44 ? 2 A A OP1 1 ATOM 23 O OP2 . A A 1 2 ? 24.392 -4.310 16.381 1.00 42.77 ? 2 A A OP2 1 ATOM 24 O "O5'" . A A 1 2 ? 23.590 -6.538 17.156 1.00 40.85 ? 2 A A "O5'" 1 ATOM 25 C "C5'" . A A 1 2 ? 23.680 -7.942 17.337 1.00 37.73 ? 2 A A "C5'" 1 ATOM 26 C "C4'" . A A 1 2 ? 22.310 -8.515 17.554 1.00 39.12 ? 2 A A "C4'" 1 ATOM 27 O "O4'" . A A 1 2 ? 21.814 -8.085 18.848 1.00 38.40 ? 2 A A "O4'" 1 ATOM 28 C "C3'" . A A 1 2 ? 21.268 -8.032 16.559 1.00 39.65 ? 2 A A "C3'" 1 ATOM 29 O "O3'" . A A 1 2 ? 21.325 -8.808 15.359 1.00 41.65 ? 2 A A "O3'" 1 ATOM 30 C "C2'" . A A 1 2 ? 19.983 -8.225 17.357 1.00 39.59 ? 2 A A "C2'" 1 ATOM 31 O "O2'" . A A 1 2 ? 19.577 -9.578 17.425 1.00 43.07 ? 2 A A "O2'" 1 ATOM 32 C "C1'" . A A 1 2 ? 20.433 -7.779 18.751 1.00 37.95 ? 2 A A "C1'" 1 ATOM 33 N N9 . A A 1 2 ? 20.275 -6.342 18.981 1.00 34.73 ? 2 A A N9 1 ATOM 34 C C8 . A A 1 2 ? 21.213 -5.360 18.796 1.00 33.06 ? 2 A A C8 1 ATOM 35 N N7 . A A 1 2 ? 20.790 -4.160 19.103 1.00 32.50 ? 2 A A N7 1 ATOM 36 C C5 . A A 1 2 ? 19.483 -4.364 19.518 1.00 34.56 ? 2 A A C5 1 ATOM 37 C C6 . A A 1 2 ? 18.490 -3.486 19.980 1.00 34.23 ? 2 A A C6 1 ATOM 38 N N6 . A A 1 2 ? 18.669 -2.169 20.121 1.00 36.26 ? 2 A A N6 1 ATOM 39 N N1 . A A 1 2 ? 17.291 -4.014 20.302 1.00 35.85 ? 2 A A N1 1 ATOM 40 C C2 . A A 1 2 ? 17.114 -5.334 20.172 1.00 34.04 ? 2 A A C2 1 ATOM 41 N N3 . A A 1 2 ? 17.970 -6.261 19.756 1.00 34.59 ? 2 A A N3 1 ATOM 42 C C4 . A A 1 2 ? 19.150 -5.704 19.439 1.00 34.12 ? 2 A A C4 1 ATOM 43 P P . A A 1 3 ? 21.022 -8.119 13.928 1.00 42.12 ? 3 A A P 1 ATOM 44 O OP1 . A A 1 3 ? 21.229 -9.162 12.890 1.00 42.60 ? 3 A A OP1 1 ATOM 45 O OP2 . A A 1 3 ? 21.746 -6.827 13.810 1.00 41.58 ? 3 A A OP2 1 ATOM 46 O "O5'" . A A 1 3 ? 19.458 -7.852 13.983 1.00 39.00 ? 3 A A "O5'" 1 ATOM 47 C "C5'" . A A 1 3 ? 18.577 -8.953 14.121 1.00 36.09 ? 3 A A "C5'" 1 ATOM 48 C "C4'" . A A 1 3 ? 17.236 -8.498 14.605 1.00 35.00 ? 3 A A "C4'" 1 ATOM 49 O "O4'" . A A 1 3 ? 17.394 -7.870 15.907 1.00 34.01 ? 3 A A "O4'" 1 ATOM 50 C "C3'" . A A 1 3 ? 16.587 -7.424 13.755 1.00 33.82 ? 3 A A "C3'" 1 ATOM 51 O "O3'" . A A 1 3 ? 15.959 -7.991 12.609 1.00 34.86 ? 3 A A "O3'" 1 ATOM 52 C "C2'" . A A 1 3 ? 15.630 -6.790 14.752 1.00 33.68 ? 3 A A "C2'" 1 ATOM 53 O "O2'" . A A 1 3 ? 14.488 -7.591 14.979 1.00 35.49 ? 3 A A "O2'" 1 ATOM 54 C "C1'" . A A 1 3 ? 16.482 -6.797 16.023 1.00 32.03 ? 3 A A "C1'" 1 ATOM 55 N N9 . A A 1 3 ? 17.236 -5.553 16.169 1.00 29.81 ? 3 A A N9 1 ATOM 56 C C8 . A A 1 3 ? 18.545 -5.262 15.858 1.00 28.66 ? 3 A A C8 1 ATOM 57 N N7 . A A 1 3 ? 18.883 -4.014 16.108 1.00 28.64 ? 3 A A N7 1 ATOM 58 C C5 . A A 1 3 ? 17.718 -3.454 16.623 1.00 27.32 ? 3 A A C5 1 ATOM 59 C C6 . A A 1 3 ? 17.400 -2.160 17.089 1.00 26.71 ? 3 A A C6 1 ATOM 60 N N6 . A A 1 3 ? 18.260 -1.139 17.119 1.00 26.73 ? 3 A A N6 1 ATOM 61 N N1 . A A 1 3 ? 16.141 -1.947 17.532 1.00 26.67 ? 3 A A N1 1 ATOM 62 C C2 . A A 1 3 ? 15.268 -2.966 17.509 1.00 26.21 ? 3 A A C2 1 ATOM 63 N N3 . A A 1 3 ? 15.445 -4.214 17.099 1.00 27.56 ? 3 A A N3 1 ATOM 64 C C4 . A A 1 3 ? 16.702 -4.396 16.665 1.00 26.63 ? 3 A A C4 1 ATOM 65 P P . U A 1 4 ? 16.004 -7.204 11.206 1.00 37.12 ? 4 U A P 1 ATOM 66 O OP1 . U A 1 4 ? 15.506 -8.123 10.144 1.00 36.75 ? 4 U A OP1 1 ATOM 67 O OP2 . U A 1 4 ? 17.349 -6.596 11.064 1.00 35.10 ? 4 U A OP2 1 ATOM 68 O "O5'" . U A 1 4 ? 14.906 -6.071 11.407 1.00 33.82 ? 4 U A "O5'" 1 ATOM 69 C "C5'" . U A 1 4 ? 13.562 -6.452 11.687 1.00 33.66 ? 4 U A "C5'" 1 ATOM 70 C "C4'" . U A 1 4 ? 12.747 -5.284 12.188 1.00 31.05 ? 4 U A "C4'" 1 ATOM 71 O "O4'" . U A 1 4 ? 13.269 -4.836 13.466 1.00 31.61 ? 4 U A "O4'" 1 ATOM 72 C "C3'" . U A 1 4 ? 12.758 -4.034 11.329 1.00 32.73 ? 4 U A "C3'" 1 ATOM 73 O "O3'" . U A 1 4 ? 11.852 -4.136 10.245 1.00 33.30 ? 4 U A "O3'" 1 ATOM 74 C "C2'" . U A 1 4 ? 12.361 -2.965 12.333 1.00 29.81 ? 4 U A "C2'" 1 ATOM 75 O "O2'" . U A 1 4 ? 10.975 -3.000 12.618 1.00 31.21 ? 4 U A "O2'" 1 ATOM 76 C "C1'" . U A 1 4 ? 13.125 -3.429 13.571 1.00 29.53 ? 4 U A "C1'" 1 ATOM 77 N N1 . U A 1 4 ? 14.460 -2.818 13.636 1.00 26.75 ? 4 U A N1 1 ATOM 78 C C2 . U A 1 4 ? 14.530 -1.551 14.160 1.00 24.24 ? 4 U A C2 1 ATOM 79 O O2 . U A 1 4 ? 13.550 -0.968 14.576 1.00 26.67 ? 4 U A O2 1 ATOM 80 N N3 . U A 1 4 ? 15.782 -0.993 14.181 1.00 24.88 ? 4 U A N3 1 ATOM 81 C C4 . U A 1 4 ? 16.949 -1.564 13.741 1.00 24.38 ? 4 U A C4 1 ATOM 82 O O4 . U A 1 4 ? 17.997 -0.924 13.816 1.00 26.76 ? 4 U A O4 1 ATOM 83 C C5 . U A 1 4 ? 16.803 -2.890 13.217 1.00 25.72 ? 4 U A C5 1 ATOM 84 C C6 . U A 1 4 ? 15.588 -3.460 13.185 1.00 24.98 ? 4 U A C6 1 ATOM 85 P P . G A 1 5 ? 12.178 -3.374 8.871 1.00 35.21 ? 5 G A P 1 ATOM 86 O OP1 . G A 1 5 ? 11.270 -3.952 7.838 1.00 34.97 ? 5 G A OP1 1 ATOM 87 O OP2 . G A 1 5 ? 13.644 -3.386 8.648 1.00 32.92 ? 5 G A OP2 1 ATOM 88 O "O5'" . G A 1 5 ? 11.735 -1.874 9.169 1.00 33.09 ? 5 G A "O5'" 1 ATOM 89 C "C5'" . G A 1 5 ? 10.407 -1.600 9.589 1.00 32.78 ? 5 G A "C5'" 1 ATOM 90 C "C4'" . G A 1 5 ? 10.279 -0.181 10.085 1.00 31.53 ? 5 G A "C4'" 1 ATOM 91 O "O4'" . G A 1 5 ? 11.020 -0.025 11.328 1.00 30.46 ? 5 G A "O4'" 1 ATOM 92 C "C3'" . G A 1 5 ? 10.860 0.891 9.177 1.00 30.33 ? 5 G A "C3'" 1 ATOM 93 O "O3'" . G A 1 5 ? 9.982 1.225 8.111 1.00 31.50 ? 5 G A "O3'" 1 ATOM 94 C "C2'" . G A 1 5 ? 11.083 2.037 10.155 1.00 27.79 ? 5 G A "C2'" 1 ATOM 95 O "O2'" . G A 1 5 ? 9.878 2.701 10.496 1.00 28.27 ? 5 G A "O2'" 1 ATOM 96 C "C1'" . G A 1 5 ? 11.574 1.282 11.387 1.00 28.55 ? 5 G A "C1'" 1 ATOM 97 N N9 . G A 1 5 ? 13.026 1.177 11.401 1.00 24.93 ? 5 G A N9 1 ATOM 98 C C8 . G A 1 5 ? 13.786 0.092 11.057 1.00 22.40 ? 5 G A C8 1 ATOM 99 N N7 . G A 1 5 ? 15.067 0.296 11.193 1.00 23.15 ? 5 G A N7 1 ATOM 100 C C5 . G A 1 5 ? 15.157 1.604 11.655 1.00 23.57 ? 5 G A C5 1 ATOM 101 C C6 . G A 1 5 ? 16.292 2.383 11.999 1.00 22.13 ? 5 G A C6 1 ATOM 102 O O6 . G A 1 5 ? 17.488 2.061 11.981 1.00 23.39 ? 5 G A O6 1 ATOM 103 N N1 . G A 1 5 ? 15.925 3.663 12.407 1.00 21.88 ? 5 G A N1 1 ATOM 104 C C2 . G A 1 5 ? 14.638 4.131 12.484 1.00 22.62 ? 5 G A C2 1 ATOM 105 N N2 . G A 1 5 ? 14.492 5.405 12.888 1.00 23.67 ? 5 G A N2 1 ATOM 106 N N3 . G A 1 5 ? 13.570 3.408 12.182 1.00 24.35 ? 5 G A N3 1 ATOM 107 C C4 . G A 1 5 ? 13.905 2.164 11.776 1.00 23.99 ? 5 G A C4 1 ATOM 108 P P . C A 1 6 ? 10.585 1.834 6.748 1.00 30.26 ? 6 C A P 1 ATOM 109 O OP1 . C A 1 6 ? 9.476 1.937 5.758 1.00 31.37 ? 6 C A OP1 1 ATOM 110 O OP2 . C A 1 6 ? 11.815 1.088 6.378 1.00 30.80 ? 6 C A OP2 1 ATOM 111 O "O5'" . C A 1 6 ? 11.014 3.309 7.150 1.00 29.34 ? 6 C A "O5'" 1 ATOM 112 C "C5'" . C A 1 6 ? 10.050 4.255 7.569 1.00 27.00 ? 6 C A "C5'" 1 ATOM 113 C "C4'" . C A 1 6 ? 10.724 5.533 7.995 1.00 26.45 ? 6 C A "C4'" 1 ATOM 114 O "O4'" . C A 1 6 ? 11.572 5.254 9.139 1.00 26.53 ? 6 C A "O4'" 1 ATOM 115 C "C3'" . C A 1 6 ? 11.687 6.136 6.985 1.00 26.49 ? 6 C A "C3'" 1 ATOM 116 O "O3'" . C A 1 6 ? 11.020 6.886 5.987 1.00 26.60 ? 6 C A "O3'" 1 ATOM 117 C "C2'" . C A 1 6 ? 12.581 6.986 7.878 1.00 24.20 ? 6 C A "C2'" 1 ATOM 118 O "O2'" . C A 1 6 ? 11.935 8.165 8.327 1.00 27.25 ? 6 C A "O2'" 1 ATOM 119 C "C1'" . C A 1 6 ? 12.729 6.070 9.085 1.00 26.24 ? 6 C A "C1'" 1 ATOM 120 N N1 . C A 1 6 ? 13.918 5.214 8.996 1.00 23.75 ? 6 C A N1 1 ATOM 121 C C2 . C A 1 6 ? 15.147 5.770 9.349 1.00 20.47 ? 6 C A C2 1 ATOM 122 O O2 . C A 1 6 ? 15.181 6.969 9.689 1.00 22.82 ? 6 C A O2 1 ATOM 123 N N3 . C A 1 6 ? 16.253 5.008 9.310 1.00 22.02 ? 6 C A N3 1 ATOM 124 C C4 . C A 1 6 ? 16.171 3.731 8.931 1.00 22.41 ? 6 C A C4 1 ATOM 125 N N4 . C A 1 6 ? 17.293 3.003 8.935 1.00 23.21 ? 6 C A N4 1 ATOM 126 C C5 . C A 1 6 ? 14.933 3.140 8.537 1.00 23.51 ? 6 C A C5 1 ATOM 127 C C6 . C A 1 6 ? 13.842 3.912 8.587 1.00 22.12 ? 6 C A C6 1 ATOM 128 P P . C A 1 7 ? 11.640 6.959 4.510 1.00 26.53 ? 7 C A P 1 ATOM 129 O OP1 . C A 1 7 ? 10.706 7.771 3.678 1.00 29.71 ? 7 C A OP1 1 ATOM 130 O OP2 . C A 1 7 ? 12.045 5.610 4.055 1.00 28.16 ? 7 C A OP2 1 ATOM 131 O "O5'" . C A 1 7 ? 12.976 7.806 4.700 1.00 24.09 ? 7 C A "O5'" 1 ATOM 132 C "C5'" . C A 1 7 ? 12.909 9.175 5.058 1.00 23.34 ? 7 C A "C5'" 1 ATOM 133 C "C4'" . C A 1 7 ? 14.297 9.712 5.284 1.00 22.34 ? 7 C A "C4'" 1 ATOM 134 O "O4'" . C A 1 7 ? 14.891 9.012 6.406 1.00 19.71 ? 7 C A "O4'" 1 ATOM 135 C "C3'" . C A 1 7 ? 15.264 9.462 4.143 1.00 21.42 ? 7 C A "C3'" 1 ATOM 136 O "O3'" . C A 1 7 ? 15.138 10.478 3.153 1.00 20.94 ? 7 C A "O3'" 1 ATOM 137 C "C2'" . C A 1 7 ? 16.602 9.553 4.858 1.00 22.07 ? 7 C A "C2'" 1 ATOM 138 O "O2'" . C A 1 7 ? 16.931 10.900 5.107 1.00 20.33 ? 7 C A "O2'" 1 ATOM 139 C "C1'" . C A 1 7 ? 16.280 8.842 6.179 1.00 22.38 ? 7 C A "C1'" 1 ATOM 140 N N1 . C A 1 7 ? 16.560 7.400 6.114 1.00 20.86 ? 7 C A N1 1 ATOM 141 C C2 . C A 1 7 ? 17.869 6.963 6.311 1.00 21.87 ? 7 C A C2 1 ATOM 142 O O2 . C A 1 7 ? 18.739 7.805 6.561 1.00 21.42 ? 7 C A O2 1 ATOM 143 N N3 . C A 1 7 ? 18.150 5.640 6.217 1.00 20.89 ? 7 C A N3 1 ATOM 144 C C4 . C A 1 7 ? 17.169 4.772 5.936 1.00 21.67 ? 7 C A C4 1 ATOM 145 N N4 . C A 1 7 ? 17.480 3.477 5.838 1.00 23.13 ? 7 C A N4 1 ATOM 146 C C5 . C A 1 7 ? 15.820 5.194 5.743 1.00 22.13 ? 7 C A C5 1 ATOM 147 C C6 . C A 1 7 ? 15.562 6.505 5.843 1.00 22.74 ? 7 C A C6 1 ATOM 148 P P . U A 1 8 ? 15.430 10.140 1.621 1.00 21.11 ? 8 U A P 1 ATOM 149 O OP1 . U A 1 8 ? 14.853 11.252 0.822 1.00 22.87 ? 8 U A OP1 1 ATOM 150 O OP2 . U A 1 8 ? 15.011 8.745 1.337 1.00 22.40 ? 8 U A OP2 1 ATOM 151 O "O5'" . U A 1 8 ? 17.013 10.159 1.514 1.00 22.73 ? 8 U A "O5'" 1 ATOM 152 C "C5'" . U A 1 8 ? 17.736 11.317 1.898 1.00 19.98 ? 8 U A "C5'" 1 ATOM 153 C "C4'" . U A 1 8 ? 19.193 10.987 2.065 1.00 21.82 ? 8 U A "C4'" 1 ATOM 154 O "O4'" . U A 1 8 ? 19.384 10.118 3.206 1.00 19.98 ? 8 U A "O4'" 1 ATOM 155 C "C3'" . U A 1 8 ? 19.849 10.240 0.926 1.00 21.99 ? 8 U A "C3'" 1 ATOM 156 O "O3'" . U A 1 8 ? 20.143 11.172 -0.096 1.00 24.55 ? 8 U A "O3'" 1 ATOM 157 C "C2'" . U A 1 8 ? 21.086 9.677 1.621 1.00 20.51 ? 8 U A "C2'" 1 ATOM 158 O "O2'" . U A 1 8 ? 22.062 10.678 1.856 1.00 18.61 ? 8 U A "O2'" 1 ATOM 159 C "C1'" . U A 1 8 ? 20.488 9.260 2.967 1.00 19.52 ? 8 U A "C1'" 1 ATOM 160 N N1 . U A 1 8 ? 20.002 7.872 2.995 1.00 19.76 ? 8 U A N1 1 ATOM 161 C C2 . U A 1 8 ? 20.899 6.902 3.384 1.00 18.55 ? 8 U A C2 1 ATOM 162 O O2 . U A 1 8 ? 22.036 7.168 3.711 1.00 21.07 ? 8 U A O2 1 ATOM 163 N N3 . U A 1 8 ? 20.410 5.615 3.380 1.00 21.87 ? 8 U A N3 1 ATOM 164 C C4 . U A 1 8 ? 19.129 5.218 3.036 1.00 24.03 ? 8 U A C4 1 ATOM 165 O O4 . U A 1 8 ? 18.833 4.022 3.069 1.00 24.66 ? 8 U A O4 1 ATOM 166 C C5 . U A 1 8 ? 18.261 6.284 2.655 1.00 21.26 ? 8 U A C5 1 ATOM 167 C C6 . U A 1 8 ? 18.717 7.547 2.647 1.00 20.39 ? 8 U A C6 1 ATOM 168 P P . G A 1 9 ? 20.582 10.660 -1.537 1.00 23.83 ? 9 G A P 1 ATOM 169 O OP1 . G A 1 9 ? 20.810 11.853 -2.395 1.00 27.12 ? 9 G A OP1 1 ATOM 170 O OP2 . G A 1 9 ? 19.696 9.572 -2.006 1.00 25.45 ? 9 G A OP2 1 ATOM 171 O "O5'" . G A 1 9 ? 22.006 10.069 -1.214 1.00 28.24 ? 9 G A "O5'" 1 ATOM 172 C "C5'" . G A 1 9 ? 22.528 9.068 -2.000 1.00 25.36 ? 9 G A "C5'" 1 ATOM 173 C "C4'" . G A 1 9 ? 23.858 8.676 -1.468 1.00 21.24 ? 9 G A "C4'" 1 ATOM 174 O "O4'" . G A 1 9 ? 23.737 8.287 -0.083 1.00 21.63 ? 9 G A "O4'" 1 ATOM 175 C "C3'" . G A 1 9 ? 24.427 7.482 -2.176 1.00 21.26 ? 9 G A "C3'" 1 ATOM 176 O "O3'" . G A 1 9 ? 25.039 7.936 -3.357 1.00 24.54 ? 9 G A "O3'" 1 ATOM 177 C "C2'" . G A 1 9 ? 25.377 6.939 -1.132 1.00 18.54 ? 9 G A "C2'" 1 ATOM 178 O "O2'" . G A 1 9 ? 26.554 7.718 -1.088 1.00 20.07 ? 9 G A "O2'" 1 ATOM 179 C "C1'" . G A 1 9 ? 24.547 7.155 0.140 1.00 21.39 ? 9 G A "C1'" 1 ATOM 180 N N9 . G A 1 9 ? 23.628 6.042 0.332 1.00 19.39 ? 9 G A N9 1 ATOM 181 C C8 . G A 1 9 ? 22.257 6.057 0.229 1.00 19.43 ? 9 G A C8 1 ATOM 182 N N7 . G A 1 9 ? 21.718 4.888 0.431 1.00 20.44 ? 9 G A N7 1 ATOM 183 C C5 . G A 1 9 ? 22.801 4.060 0.696 1.00 20.92 ? 9 G A C5 1 ATOM 184 C C6 . G A 1 9 ? 22.848 2.680 0.997 1.00 20.39 ? 9 G A C6 1 ATOM 185 O O6 . G A 1 9 ? 21.911 1.885 1.105 1.00 21.33 ? 9 G A O6 1 ATOM 186 N N1 . G A 1 9 ? 24.157 2.243 1.182 1.00 18.65 ? 9 G A N1 1 ATOM 187 C C2 . G A 1 9 ? 25.272 3.036 1.093 1.00 18.66 ? 9 G A C2 1 ATOM 188 N N2 . G A 1 9 ? 26.456 2.437 1.298 1.00 18.93 ? 9 G A N2 1 ATOM 189 N N3 . G A 1 9 ? 25.235 4.325 0.824 1.00 19.63 ? 9 G A N3 1 ATOM 190 C C4 . G A 1 9 ? 23.980 4.763 0.636 1.00 21.02 ? 9 G A C4 1 ATOM 191 P P . C A 1 10 ? 24.959 7.027 -4.668 1.00 26.51 ? 10 C A P 1 ATOM 192 O OP1 . C A 1 10 ? 25.548 7.810 -5.779 1.00 28.46 ? 10 C A OP1 1 ATOM 193 O OP2 . C A 1 10 ? 23.578 6.490 -4.805 1.00 26.94 ? 10 C A OP2 1 ATOM 194 O "O5'" . C A 1 10 ? 25.892 5.799 -4.288 1.00 27.08 ? 10 C A "O5'" 1 ATOM 195 C "C5'" . C A 1 10 ? 27.261 6.010 -3.975 1.00 25.48 ? 10 C A "C5'" 1 ATOM 196 C "C4'" . C A 1 10 ? 27.938 4.704 -3.626 1.00 25.69 ? 10 C A "C4'" 1 ATOM 197 O "O4'" . C A 1 10 ? 27.405 4.224 -2.363 1.00 24.62 ? 10 C A "O4'" 1 ATOM 198 C "C3'" . C A 1 10 ? 27.679 3.543 -4.575 1.00 27.02 ? 10 C A "C3'" 1 ATOM 199 O "O3'" . C A 1 10 ? 28.463 3.559 -5.751 1.00 29.98 ? 10 C A "O3'" 1 ATOM 200 C "C2'" . C A 1 10 ? 27.985 2.348 -3.690 1.00 24.36 ? 10 C A "C2'" 1 ATOM 201 O "O2'" . C A 1 10 ? 29.382 2.188 -3.512 1.00 27.38 ? 10 C A "O2'" 1 ATOM 202 C "C1'" . C A 1 10 ? 27.367 2.805 -2.370 1.00 23.31 ? 10 C A "C1'" 1 ATOM 203 N N1 . C A 1 10 ? 25.968 2.346 -2.250 1.00 22.73 ? 10 C A N1 1 ATOM 204 C C2 . C A 1 10 ? 25.758 1.005 -1.906 1.00 21.84 ? 10 C A C2 1 ATOM 205 O O2 . C A 1 10 ? 26.751 0.287 -1.677 1.00 22.69 ? 10 C A O2 1 ATOM 206 N N3 . C A 1 10 ? 24.493 0.528 -1.829 1.00 22.16 ? 10 C A N3 1 ATOM 207 C C4 . C A 1 10 ? 23.455 1.338 -2.079 1.00 23.28 ? 10 C A C4 1 ATOM 208 N N4 . C A 1 10 ? 22.225 0.822 -2.000 1.00 23.54 ? 10 C A N4 1 ATOM 209 C C5 . C A 1 10 ? 23.639 2.713 -2.420 1.00 22.17 ? 10 C A C5 1 ATOM 210 C C6 . C A 1 10 ? 24.903 3.173 -2.488 1.00 21.31 ? 10 C A C6 1 ATOM 211 P P . G A 1 11 ? 27.938 2.768 -7.052 1.00 33.39 ? 11 G A P 1 ATOM 212 O OP1 . G A 1 11 ? 28.918 3.079 -8.124 1.00 35.11 ? 11 G A OP1 1 ATOM 213 O OP2 . G A 1 11 ? 26.500 3.047 -7.271 1.00 33.57 ? 11 G A OP2 1 ATOM 214 O "O5'" . G A 1 11 ? 28.057 1.225 -6.663 1.00 32.53 ? 11 G A "O5'" 1 ATOM 215 C "C5'" . G A 1 11 ? 29.336 0.662 -6.514 1.00 30.30 ? 11 G A "C5'" 1 ATOM 216 C "C4'" . G A 1 11 ? 29.310 -0.806 -6.106 1.00 29.12 ? 11 G A "C4'" 1 ATOM 217 O "O4'" . G A 1 11 ? 28.568 -0.960 -4.850 1.00 26.61 ? 11 G A "O4'" 1 ATOM 218 C "C3'" . G A 1 11 ? 28.604 -1.811 -7.021 1.00 27.09 ? 11 G A "C3'" 1 ATOM 219 O "O3'" . G A 1 11 ? 29.344 -2.172 -8.187 1.00 28.18 ? 11 G A "O3'" 1 ATOM 220 C "C2'" . G A 1 11 ? 28.423 -2.984 -6.071 1.00 25.06 ? 11 G A "C2'" 1 ATOM 221 O "O2'" . G A 1 11 ? 29.679 -3.575 -5.805 1.00 26.12 ? 11 G A "O2'" 1 ATOM 222 C "C1'" . G A 1 11 ? 28.019 -2.273 -4.789 1.00 26.65 ? 11 G A "C1'" 1 ATOM 223 N N9 . G A 1 11 ? 26.566 -2.274 -4.678 1.00 22.53 ? 11 G A N9 1 ATOM 224 C C8 . G A 1 11 ? 25.674 -1.244 -4.822 1.00 20.80 ? 11 G A C8 1 ATOM 225 N N7 . G A 1 11 ? 24.427 -1.629 -4.700 1.00 22.39 ? 11 G A N7 1 ATOM 226 C C5 . G A 1 11 ? 24.507 -2.994 -4.453 1.00 20.44 ? 11 G A C5 1 ATOM 227 C C6 . G A 1 11 ? 23.484 -3.958 -4.231 1.00 21.53 ? 11 G A C6 1 ATOM 228 O O6 . G A 1 11 ? 22.263 -3.796 -4.202 1.00 20.78 ? 11 G A O6 1 ATOM 229 N N1 . G A 1 11 ? 24.015 -5.232 -4.027 1.00 20.59 ? 11 G A N1 1 ATOM 230 C C2 . G A 1 11 ? 25.349 -5.540 -4.032 1.00 20.40 ? 11 G A C2 1 ATOM 231 N N2 . G A 1 11 ? 25.662 -6.840 -3.825 1.00 20.43 ? 11 G A N2 1 ATOM 232 N N3 . G A 1 11 ? 26.309 -4.648 -4.229 1.00 20.66 ? 11 G A N3 1 ATOM 233 C C4 . G A 1 11 ? 25.817 -3.406 -4.431 1.00 21.02 ? 11 G A C4 1 ATOM 234 P P . A A 1 12 ? 28.580 -2.768 -9.480 1.00 29.84 ? 12 A A P 1 ATOM 235 O OP1 . A A 1 12 ? 29.642 -2.987 -10.504 1.00 31.75 ? 12 A A OP1 1 ATOM 236 O OP2 . A A 1 12 ? 27.386 -1.971 -9.846 1.00 29.34 ? 12 A A OP2 1 ATOM 237 O "O5'" . A A 1 12 ? 28.052 -4.199 -9.024 1.00 28.18 ? 12 A A "O5'" 1 ATOM 238 C "C5'" . A A 1 12 ? 28.975 -5.247 -8.736 1.00 26.04 ? 12 A A "C5'" 1 ATOM 239 C "C4'" . A A 1 12 ? 28.249 -6.558 -8.580 1.00 23.11 ? 12 A A "C4'" 1 ATOM 240 O "O4'" . A A 1 12 ? 27.450 -6.549 -7.372 1.00 24.29 ? 12 A A "O4'" 1 ATOM 241 C "C3'" . A A 1 12 ? 27.235 -6.898 -9.656 1.00 23.93 ? 12 A A "C3'" 1 ATOM 242 O "O3'" . A A 1 12 ? 27.871 -7.360 -10.841 1.00 25.44 ? 12 A A "O3'" 1 ATOM 243 C "C2'" . A A 1 12 ? 26.427 -7.980 -8.953 1.00 23.34 ? 12 A A "C2'" 1 ATOM 244 O "O2'" . A A 1 12 ? 27.127 -9.211 -8.842 1.00 24.20 ? 12 A A "O2'" 1 ATOM 245 C "C1'" . A A 1 12 ? 26.308 -7.378 -7.554 1.00 23.90 ? 12 A A "C1'" 1 ATOM 246 N N9 . A A 1 12 ? 25.121 -6.539 -7.417 1.00 22.62 ? 12 A A N9 1 ATOM 247 C C8 . A A 1 12 ? 25.077 -5.171 -7.437 1.00 20.93 ? 12 A A C8 1 ATOM 248 N N7 . A A 1 12 ? 23.873 -4.679 -7.290 1.00 22.59 ? 12 A A N7 1 ATOM 249 C C5 . A A 1 12 ? 23.070 -5.801 -7.158 1.00 21.21 ? 12 A A C5 1 ATOM 250 C C6 . A A 1 12 ? 21.694 -5.949 -6.966 1.00 22.73 ? 12 A A C6 1 ATOM 251 N N6 . A A 1 12 ? 20.847 -4.919 -6.886 1.00 22.69 ? 12 A A N6 1 ATOM 252 N N1 . A A 1 12 ? 21.204 -7.202 -6.862 1.00 22.65 ? 12 A A N1 1 ATOM 253 C C2 . A A 1 12 ? 22.056 -8.232 -6.951 1.00 22.42 ? 12 A A C2 1 ATOM 254 N N3 . A A 1 12 ? 23.377 -8.219 -7.135 1.00 25.27 ? 12 A A N3 1 ATOM 255 C C4 . A A 1 12 ? 23.825 -6.954 -7.233 1.00 22.43 ? 12 A A C4 1 ATOM 256 P P . G A 1 13 ? 27.202 -7.071 -12.273 1.00 25.96 ? 13 G A P 1 ATOM 257 O OP1 . G A 1 13 ? 28.128 -7.669 -13.272 1.00 28.98 ? 13 G A OP1 1 ATOM 258 O OP2 . G A 1 13 ? 26.798 -5.652 -12.417 1.00 25.55 ? 13 G A OP2 1 ATOM 259 O "O5'" . G A 1 13 ? 25.870 -7.930 -12.234 1.00 25.10 ? 13 G A "O5'" 1 ATOM 260 C "C5'" . G A 1 13 ? 25.948 -9.334 -12.132 1.00 24.50 ? 13 G A "C5'" 1 ATOM 261 C "C4'" . G A 1 13 ? 24.576 -9.927 -11.973 1.00 25.06 ? 13 G A "C4'" 1 ATOM 262 O "O4'" . G A 1 13 ? 24.002 -9.464 -10.719 1.00 25.27 ? 13 G A "O4'" 1 ATOM 263 C "C3'" . G A 1 13 ? 23.545 -9.490 -13.005 1.00 24.26 ? 13 G A "C3'" 1 ATOM 264 O "O3'" . G A 1 13 ? 23.665 -10.190 -14.229 1.00 25.65 ? 13 G A "O3'" 1 ATOM 265 C "C2'" . G A 1 13 ? 22.247 -9.796 -12.279 1.00 21.12 ? 13 G A "C2'" 1 ATOM 266 O "O2'" . G A 1 13 ? 21.989 -11.191 -12.267 1.00 24.54 ? 13 G A "O2'" 1 ATOM 267 C "C1'" . G A 1 13 ? 22.596 -9.349 -10.864 1.00 24.18 ? 13 G A "C1'" 1 ATOM 268 N N9 . G A 1 13 ? 22.195 -7.966 -10.651 1.00 20.41 ? 13 G A N9 1 ATOM 269 C C8 . G A 1 13 ? 22.965 -6.831 -10.729 1.00 20.55 ? 13 G A C8 1 ATOM 270 N N7 . G A 1 13 ? 22.282 -5.738 -10.514 1.00 22.73 ? 13 G A N7 1 ATOM 271 C C5 . G A 1 13 ? 20.991 -6.184 -10.275 1.00 20.78 ? 13 G A C5 1 ATOM 272 C C6 . G A 1 13 ? 19.796 -5.462 -9.988 1.00 22.14 ? 13 G A C6 1 ATOM 273 O O6 . G A 1 13 ? 19.643 -4.244 -9.887 1.00 23.19 ? 13 G A O6 1 ATOM 274 N N1 . G A 1 13 ? 18.711 -6.317 -9.822 1.00 21.19 ? 13 G A N1 1 ATOM 275 C C2 . G A 1 13 ? 18.760 -7.685 -9.928 1.00 20.45 ? 13 G A C2 1 ATOM 276 N N2 . G A 1 13 ? 17.604 -8.347 -9.746 1.00 22.45 ? 13 G A N2 1 ATOM 277 N N3 . G A 1 13 ? 19.863 -8.362 -10.195 1.00 20.35 ? 13 G A N3 1 ATOM 278 C C4 . G A 1 13 ? 20.926 -7.556 -10.354 1.00 21.88 ? 13 G A C4 1 ATOM 279 P P . C A 1 14 ? 23.214 -9.484 -15.599 1.00 25.57 ? 14 C A P 1 ATOM 280 O OP1 . C A 1 14 ? 23.579 -10.384 -16.730 1.00 26.19 ? 14 C A OP1 1 ATOM 281 O OP2 . C A 1 14 ? 23.695 -8.075 -15.591 1.00 25.27 ? 14 C A OP2 1 ATOM 282 O "O5'" . C A 1 14 ? 21.629 -9.442 -15.536 1.00 25.38 ? 14 C A "O5'" 1 ATOM 283 C "C5'" . C A 1 14 ? 20.908 -10.648 -15.683 1.00 22.76 ? 14 C A "C5'" 1 ATOM 284 C "C4'" . C A 1 14 ? 19.449 -10.452 -15.371 1.00 22.65 ? 14 C A "C4'" 1 ATOM 285 O "O4'" . C A 1 14 ? 19.314 -9.881 -14.042 1.00 22.01 ? 14 C A "O4'" 1 ATOM 286 C "C3'" . C A 1 14 ? 18.702 -9.465 -16.252 1.00 23.12 ? 14 C A "C3'" 1 ATOM 287 O "O3'" . C A 1 14 ? 18.327 -10.053 -17.485 1.00 24.74 ? 14 C A "O3'" 1 ATOM 288 C "C2'" . C A 1 14 ? 17.512 -9.125 -15.370 1.00 20.22 ? 14 C A "C2'" 1 ATOM 289 O "O2'" . C A 1 14 ? 16.610 -10.215 -15.309 1.00 22.07 ? 14 C A "O2'" 1 ATOM 290 C "C1'" . C A 1 14 ? 18.178 -9.032 -14.003 1.00 20.39 ? 14 C A "C1'" 1 ATOM 291 N N1 . C A 1 14 ? 18.602 -7.652 -13.733 1.00 19.84 ? 14 C A N1 1 ATOM 292 C C2 . C A 1 14 ? 17.630 -6.736 -13.318 1.00 19.06 ? 14 C A C2 1 ATOM 293 O O2 . C A 1 14 ? 16.461 -7.131 -13.180 1.00 20.75 ? 14 C A O2 1 ATOM 294 N N3 . C A 1 14 ? 17.984 -5.449 -13.087 1.00 20.57 ? 14 C A N3 1 ATOM 295 C C4 . C A 1 14 ? 19.250 -5.066 -13.263 1.00 20.45 ? 14 C A C4 1 ATOM 296 N N4 . C A 1 14 ? 19.554 -3.773 -13.033 1.00 21.20 ? 14 C A N4 1 ATOM 297 C C5 . C A 1 14 ? 20.264 -5.980 -13.684 1.00 20.12 ? 14 C A C5 1 ATOM 298 C C6 . C A 1 14 ? 19.900 -7.256 -13.900 1.00 19.91 ? 14 C A C6 1 ATOM 299 P P . A A 1 15 ? 18.121 -9.128 -18.788 1.00 24.49 ? 15 A A P 1 ATOM 300 O OP1 . A A 1 15 ? 17.909 -10.040 -19.948 1.00 29.37 ? 15 A A OP1 1 ATOM 301 O OP2 . A A 1 15 ? 19.182 -8.094 -18.854 1.00 28.72 ? 15 A A OP2 1 ATOM 302 O "O5'" . A A 1 15 ? 16.738 -8.396 -18.527 1.00 24.62 ? 15 A A "O5'" 1 ATOM 303 C "C5'" . A A 1 15 ? 15.558 -9.144 -18.308 1.00 26.25 ? 15 A A "C5'" 1 ATOM 304 C "C4'" . A A 1 15 ? 14.459 -8.233 -17.846 1.00 26.83 ? 15 A A "C4'" 1 ATOM 305 O "O4'" . A A 1 15 ? 14.854 -7.637 -16.583 1.00 27.01 ? 15 A A "O4'" 1 ATOM 306 C "C3'" . A A 1 15 ? 14.198 -7.039 -18.748 1.00 26.82 ? 15 A A "C3'" 1 ATOM 307 O "O3'" . A A 1 15 ? 13.341 -7.383 -19.836 1.00 29.18 ? 15 A A "O3'" 1 ATOM 308 C "C2'" . A A 1 15 ? 13.553 -6.061 -17.778 1.00 26.39 ? 15 A A "C2'" 1 ATOM 309 O "O2'" . A A 1 15 ? 12.217 -6.419 -17.491 1.00 28.63 ? 15 A A "O2'" 1 ATOM 310 C "C1'" . A A 1 15 ? 14.380 -6.306 -16.517 1.00 25.32 ? 15 A A "C1'" 1 ATOM 311 N N9 . A A 1 15 ? 15.528 -5.415 -16.381 1.00 22.19 ? 15 A A N9 1 ATOM 312 C C8 . A A 1 15 ? 16.854 -5.680 -16.600 1.00 20.99 ? 15 A A C8 1 ATOM 313 N N7 . A A 1 15 ? 17.645 -4.668 -16.343 1.00 19.67 ? 15 A A N7 1 ATOM 314 C C5 . A A 1 15 ? 16.776 -3.663 -15.928 1.00 21.91 ? 15 A A C5 1 ATOM 315 C C6 . A A 1 15 ? 16.984 -2.326 -15.490 1.00 20.10 ? 15 A A C6 1 ATOM 316 N N6 . A A 1 15 ? 18.186 -1.745 -15.379 1.00 22.13 ? 15 A A N6 1 ATOM 317 N N1 . A A 1 15 ? 15.892 -1.603 -15.156 1.00 21.34 ? 15 A A N1 1 ATOM 318 C C2 . A A 1 15 ? 14.684 -2.179 -15.251 1.00 21.34 ? 15 A A C2 1 ATOM 319 N N3 . A A 1 15 ? 14.367 -3.415 -15.636 1.00 25.14 ? 15 A A N3 1 ATOM 320 C C4 . A A 1 15 ? 15.470 -4.109 -15.962 1.00 21.48 ? 15 A A C4 1 HETATM 321 P P . 5BU A 1 16 ? 13.389 -6.518 -21.199 1.00 28.60 ? 16 5BU A P 1 HETATM 322 O OP1 . 5BU A 1 16 ? 12.542 -7.215 -22.194 1.00 32.87 ? 16 5BU A OP1 1 HETATM 323 O OP2 . 5BU A 1 16 ? 14.784 -6.171 -21.544 1.00 28.58 ? 16 5BU A OP2 1 HETATM 324 O "O5'" . 5BU A 1 16 ? 12.666 -5.161 -20.812 1.00 31.70 ? 16 5BU A "O5'" 1 HETATM 325 C "C5'" . 5BU A 1 16 ? 11.299 -5.155 -20.462 1.00 32.13 ? 16 5BU A "C5'" 1 HETATM 326 C "C4'" . 5BU A 1 16 ? 10.901 -3.783 -20.007 1.00 33.64 ? 16 5BU A "C4'" 1 HETATM 327 O "O4'" . 5BU A 1 16 ? 11.699 -3.442 -18.842 1.00 34.51 ? 16 5BU A "O4'" 1 HETATM 328 C "C3'" . 5BU A 1 16 ? 11.208 -2.665 -20.991 1.00 35.16 ? 16 5BU A "C3'" 1 HETATM 329 O "O3'" . 5BU A 1 16 ? 10.199 -2.537 -21.984 1.00 38.18 ? 16 5BU A "O3'" 1 HETATM 330 C "C2'" . 5BU A 1 16 ? 11.282 -1.456 -20.070 1.00 34.49 ? 16 5BU A "C2'" 1 HETATM 331 O "O2'" . 5BU A 1 16 ? 9.994 -1.037 -19.669 1.00 37.73 ? 16 5BU A "O2'" 1 HETATM 332 C "C1'" . 5BU A 1 16 ? 11.987 -2.059 -18.855 1.00 32.62 ? 16 5BU A "C1'" 1 HETATM 333 N N1 . 5BU A 1 16 ? 13.447 -1.874 -18.852 1.00 29.21 ? 16 5BU A N1 1 HETATM 334 C C2 . 5BU A 1 16 ? 13.894 -0.668 -18.375 1.00 28.60 ? 16 5BU A C2 1 HETATM 335 O O2 . 5BU A 1 16 ? 13.121 0.222 -18.024 1.00 30.23 ? 16 5BU A O2 1 HETATM 336 N N3 . 5BU A 1 16 ? 15.258 -0.528 -18.319 1.00 25.77 ? 16 5BU A N3 1 HETATM 337 C C4 . 5BU A 1 16 ? 16.219 -1.464 -18.693 1.00 25.71 ? 16 5BU A C4 1 HETATM 338 O O4 . 5BU A 1 16 ? 17.407 -1.184 -18.535 1.00 25.29 ? 16 5BU A O4 1 HETATM 339 C C5 . 5BU A 1 16 ? 15.689 -2.706 -19.218 1.00 26.25 ? 16 5BU A C5 1 HETATM 340 C C6 . 5BU A 1 16 ? 14.344 -2.863 -19.280 1.00 25.76 ? 16 5BU A C6 1 HETATM 341 BR BR . 5BU A 1 16 ? 16.725 -3.929 -19.747 1.00 29.90 ? 16 5BU A BR 1 ATOM 342 P P . C A 1 17 ? 10.597 -2.044 -23.465 1.00 40.48 ? 17 C A P 1 ATOM 343 O OP1 . C A 1 17 ? 9.356 -2.114 -24.288 1.00 41.35 ? 17 C A OP1 1 ATOM 344 O OP2 . C A 1 17 ? 11.817 -2.768 -23.913 1.00 40.87 ? 17 C A OP2 1 ATOM 345 O "O5'" . C A 1 17 ? 10.986 -0.520 -23.266 1.00 38.78 ? 17 C A "O5'" 1 ATOM 346 C "C5'" . C A 1 17 ? 10.009 0.415 -22.849 1.00 38.23 ? 17 C A "C5'" 1 ATOM 347 C "C4'" . C A 1 17 ? 10.671 1.687 -22.399 1.00 36.79 ? 17 C A "C4'" 1 ATOM 348 O "O4'" . C A 1 17 ? 11.555 1.395 -21.286 1.00 34.56 ? 17 C A "O4'" 1 ATOM 349 C "C3'" . C A 1 17 ? 11.585 2.319 -23.431 1.00 36.67 ? 17 C A "C3'" 1 ATOM 350 O "O3'" . C A 1 17 ? 10.836 3.098 -24.348 1.00 38.95 ? 17 C A "O3'" 1 ATOM 351 C "C2'" . C A 1 17 ? 12.522 3.149 -22.565 1.00 34.98 ? 17 C A "C2'" 1 ATOM 352 O "O2'" . C A 1 17 ? 11.983 4.384 -22.135 1.00 37.30 ? 17 C A "O2'" 1 ATOM 353 C "C1'" . C A 1 17 ? 12.696 2.231 -21.357 1.00 32.94 ? 17 C A "C1'" 1 ATOM 354 N N1 . C A 1 17 ? 13.902 1.402 -21.495 1.00 31.45 ? 17 C A N1 1 ATOM 355 C C2 . C A 1 17 ? 15.111 1.973 -21.149 1.00 28.56 ? 17 C A C2 1 ATOM 356 O O2 . C A 1 17 ? 15.109 3.141 -20.730 1.00 30.68 ? 17 C A O2 1 ATOM 357 N N3 . C A 1 17 ? 16.254 1.253 -21.275 1.00 31.06 ? 17 C A N3 1 ATOM 358 C C4 . C A 1 17 ? 16.200 0.000 -21.730 1.00 29.72 ? 17 C A C4 1 ATOM 359 N N4 . C A 1 17 ? 17.348 -0.678 -21.840 1.00 28.29 ? 17 C A N4 1 ATOM 360 C C5 . C A 1 17 ? 14.967 -0.615 -22.093 1.00 29.46 ? 17 C A C5 1 ATOM 361 C C6 . C A 1 17 ? 13.849 0.117 -21.959 1.00 29.76 ? 17 C A C6 1 ATOM 362 P P . C A 1 18 ? 11.364 3.275 -25.852 1.00 39.61 ? 18 C A P 1 ATOM 363 O OP1 . C A 1 18 ? 10.250 3.882 -26.633 1.00 42.47 ? 18 C A OP1 1 ATOM 364 O OP2 . C A 1 18 ? 11.957 1.987 -26.297 1.00 40.43 ? 18 C A OP2 1 ATOM 365 O "O5'" . C A 1 18 ? 12.519 4.355 -25.696 1.00 39.13 ? 18 C A "O5'" 1 ATOM 366 C "C5'" . C A 1 18 ? 12.203 5.645 -25.199 1.00 39.26 ? 18 C A "C5'" 1 ATOM 367 C "C4'" . C A 1 18 ? 13.443 6.476 -25.048 1.00 38.30 ? 18 C A "C4'" 1 ATOM 368 O "O4'" . C A 1 18 ? 14.241 5.965 -23.946 1.00 37.36 ? 18 C A "O4'" 1 ATOM 369 C "C3'" . C A 1 18 ? 14.380 6.423 -26.241 1.00 39.61 ? 18 C A "C3'" 1 ATOM 370 O "O3'" . C A 1 18 ? 13.968 7.353 -27.242 1.00 40.41 ? 18 C A "O3'" 1 ATOM 371 C "C2'" . C A 1 18 ? 15.711 6.816 -25.610 1.00 38.13 ? 18 C A "C2'" 1 ATOM 372 O "O2'" . C A 1 18 ? 15.806 8.213 -25.429 1.00 39.82 ? 18 C A "O2'" 1 ATOM 373 C "C1'" . C A 1 18 ? 15.614 6.150 -24.234 1.00 36.47 ? 18 C A "C1'" 1 ATOM 374 N N1 . C A 1 18 ? 16.324 4.865 -24.115 1.00 35.13 ? 18 C A N1 1 ATOM 375 C C2 . C A 1 18 ? 17.588 4.861 -23.517 1.00 34.10 ? 18 C A C2 1 ATOM 376 O O2 . C A 1 18 ? 18.053 5.927 -23.096 1.00 35.49 ? 18 C A O2 1 ATOM 377 N N3 . C A 1 18 ? 18.271 3.697 -23.411 1.00 33.81 ? 18 C A N3 1 ATOM 378 C C4 . C A 1 18 ? 17.737 2.567 -23.878 1.00 33.71 ? 18 C A C4 1 ATOM 379 N N4 . C A 1 18 ? 18.449 1.443 -23.753 1.00 32.98 ? 18 C A N4 1 ATOM 380 C C5 . C A 1 18 ? 16.448 2.539 -24.491 1.00 33.22 ? 18 C A C5 1 ATOM 381 C C6 . C A 1 18 ? 15.780 3.701 -24.585 1.00 33.68 ? 18 C A C6 1 ATOM 382 P P . C A 1 19 ? 13.890 6.889 -28.777 1.00 45.37 ? 19 C A P 1 ATOM 383 O OP1 . C A 1 19 ? 12.909 5.781 -28.895 1.00 27.02 ? 19 C A OP1 1 ATOM 384 O OP2 . C A 1 19 ? 15.285 6.669 -29.208 1.00 27.02 ? 19 C A OP2 1 ATOM 385 O "O5'" . C A 1 19 ? 13.803 7.981 -29.754 1.00 28.55 ? 19 C A "O5'" 1 ATOM 386 C "C5'" . C A 1 19 ? 13.455 7.871 -31.131 1.00 28.55 ? 19 C A "C5'" 1 ATOM 387 C "C4'" . C A 1 19 ? 14.462 8.606 -31.983 1.00 28.55 ? 19 C A "C4'" 1 ATOM 388 O "O4'" . C A 1 19 ? 15.784 8.056 -31.741 1.00 28.55 ? 19 C A "O4'" 1 ATOM 389 C "C3'" . C A 1 19 ? 14.274 8.456 -33.484 1.00 28.55 ? 19 C A "C3'" 1 ATOM 390 O "O3'" . C A 1 19 ? 13.231 9.279 -34.018 1.00 28.55 ? 19 C A "O3'" 1 ATOM 391 C "C2'" . C A 1 19 ? 15.671 8.754 -34.009 1.00 28.55 ? 19 C A "C2'" 1 ATOM 392 O "O2'" . C A 1 19 ? 15.961 10.137 -34.036 1.00 28.55 ? 19 C A "O2'" 1 ATOM 393 C "C1'" . C A 1 19 ? 16.537 8.072 -32.947 1.00 28.55 ? 19 C A "C1'" 1 ATOM 394 N N1 . C A 1 19 ? 16.901 6.684 -33.301 1.00 28.55 ? 19 C A N1 1 ATOM 395 C C2 . C A 1 19 ? 18.121 6.449 -33.996 1.00 28.55 ? 19 C A C2 1 ATOM 396 O O2 . C A 1 19 ? 18.855 7.409 -34.286 1.00 28.55 ? 19 C A O2 1 ATOM 397 N N3 . C A 1 19 ? 18.451 5.167 -34.327 1.00 28.55 ? 19 C A N3 1 ATOM 398 C C4 . C A 1 19 ? 17.633 4.150 -34.000 1.00 28.55 ? 19 C A C4 1 ATOM 399 N N4 . C A 1 19 ? 18.002 2.915 -34.348 1.00 28.55 ? 19 C A N4 1 ATOM 400 C C5 . C A 1 19 ? 16.397 4.360 -33.298 1.00 28.55 ? 19 C A C5 1 ATOM 401 C C6 . C A 1 19 ? 16.076 5.631 -32.973 1.00 28.55 ? 19 C A C6 1 HETATM 402 O O . HOH B 2 . ? 24.062 -9.199 -3.671 1.00 27.25 ? 20 HOH A O 1 HETATM 403 O O . HOH B 2 . ? 12.498 12.406 2.011 1.00 30.74 ? 21 HOH A O 1 HETATM 404 O O . HOH B 2 . ? 27.822 9.506 -2.588 1.00 32.69 ? 22 HOH A O 1 HETATM 405 O O . HOH B 2 . ? 19.906 -2.158 -18.909 1.00 35.05 ? 23 HOH A O 1 HETATM 406 O O . HOH B 2 . ? 25.812 -11.447 -8.887 1.00 32.72 ? 24 HOH A O 1 HETATM 407 O O . HOH B 2 . ? 30.741 -7.981 -12.039 1.00 36.31 ? 25 HOH A O 1 HETATM 408 O O . HOH B 2 . ? 14.457 6.008 2.510 1.00 37.01 ? 26 HOH A O 1 HETATM 409 O O . HOH B 2 . ? 16.568 2.972 2.364 1.00 36.55 ? 27 HOH A O 1 HETATM 410 O O . HOH B 2 . ? 26.233 -7.732 -16.759 1.00 33.38 ? 28 HOH A O 1 HETATM 411 O O . HOH B 2 . ? 19.096 0.295 11.014 1.00 36.51 ? 29 HOH A O 1 HETATM 412 O O . HOH B 2 . ? 17.694 -1.080 -25.122 1.00 42.98 ? 30 HOH A O 1 HETATM 413 O O . HOH B 2 . ? 17.041 0.224 7.818 1.00 35.84 ? 31 HOH A O 1 HETATM 414 O O . HOH B 2 . ? 14.024 -0.292 7.330 1.00 39.56 ? 32 HOH A O 1 HETATM 415 O O . HOH B 2 . ? 22.155 -2.956 -13.616 1.00 35.26 ? 33 HOH A O 1 HETATM 416 O O . HOH B 2 . ? 19.166 3.785 -0.400 1.00 35.01 ? 34 HOH A O 1 HETATM 417 O O . HOH B 2 . ? 19.906 -5.476 -17.521 1.00 42.25 ? 35 HOH A O 1 HETATM 418 O O . HOH B 2 . ? 16.825 -1.370 9.942 1.00 37.33 ? 36 HOH A O 1 HETATM 419 O O . HOH B 2 . ? 20.183 12.608 -4.975 1.00 39.19 ? 37 HOH A O 1 HETATM 420 O O . HOH B 2 . ? 21.662 -0.731 -4.816 1.00 42.38 ? 38 HOH A O 1 HETATM 421 O O . HOH B 2 . ? 9.575 4.989 11.579 1.00 40.29 ? 39 HOH A O 1 HETATM 422 O O . HOH B 2 . ? 20.100 -2.526 -6.683 1.00 35.23 ? 40 HOH A O 1 HETATM 423 O O . HOH B 2 . ? 11.866 -4.278 -15.354 1.00 42.39 ? 41 HOH A O 1 HETATM 424 O O . HOH B 2 . ? 13.098 3.187 4.558 1.00 44.97 ? 42 HOH A O 1 HETATM 425 O O . HOH B 2 . ? 9.860 9.576 7.163 1.00 43.45 ? 43 HOH A O 1 HETATM 426 O O . HOH B 2 . ? 22.541 -2.323 -7.784 1.00 39.89 ? 44 HOH A O 1 HETATM 427 O O . HOH B 2 . ? 8.089 8.566 5.370 1.00 41.70 ? 45 HOH A O 1 HETATM 428 O O . HOH B 2 . ? 23.995 -5.750 -14.268 1.00 40.69 ? 46 HOH A O 1 HETATM 429 O O . HOH B 2 . ? 7.158 2.573 9.450 1.00 41.30 ? 47 HOH A O 1 HETATM 430 O O . HOH B 2 . ? 11.238 -0.642 -27.500 1.00 46.24 ? 48 HOH A O 1 HETATM 431 O O . HOH B 2 . ? 15.452 1.622 4.802 1.00 39.76 ? 49 HOH A O 1 HETATM 432 O O . HOH B 2 . ? 16.660 7.250 -0.382 1.00 39.51 ? 50 HOH A O 1 HETATM 433 O O . HOH B 2 . ? 20.036 2.673 -2.911 1.00 41.40 ? 51 HOH A O 1 HETATM 434 O O . HOH B 2 . ? 8.436 3.450 3.092 1.00 47.90 ? 52 HOH A O 1 HETATM 435 O O . HOH B 2 . ? 14.722 -3.742 -23.169 1.00 40.49 ? 53 HOH A O 1 HETATM 436 O O . HOH B 2 . ? 19.154 7.303 -0.940 1.00 38.72 ? 54 HOH A O 1 HETATM 437 O O . HOH B 2 . ? 17.457 -3.150 -23.553 1.00 45.01 ? 55 HOH A O 1 HETATM 438 O O . HOH B 2 . ? 24.859 -4.302 -11.145 1.00 40.99 ? 56 HOH A O 1 HETATM 439 O O . HOH B 2 . ? 12.037 8.323 1.135 1.00 46.30 ? 57 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 5BU 16 16 16 5BU +U A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 20 1 HOH TIP A . B 2 HOH 2 21 2 HOH TIP A . B 2 HOH 3 22 3 HOH TIP A . B 2 HOH 4 23 4 HOH TIP A . B 2 HOH 5 24 5 HOH TIP A . B 2 HOH 6 25 6 HOH TIP A . B 2 HOH 7 26 7 HOH TIP A . B 2 HOH 8 27 8 HOH TIP A . B 2 HOH 9 28 9 HOH TIP A . B 2 HOH 10 29 10 HOH TIP A . B 2 HOH 11 30 11 HOH TIP A . B 2 HOH 12 31 12 HOH TIP A . B 2 HOH 13 32 13 HOH TIP A . B 2 HOH 14 33 14 HOH TIP A . B 2 HOH 15 34 15 HOH TIP A . B 2 HOH 16 35 16 HOH TIP A . B 2 HOH 17 36 17 HOH TIP A . B 2 HOH 18 37 18 HOH TIP A . B 2 HOH 19 38 19 HOH TIP A . B 2 HOH 20 39 20 HOH TIP A . B 2 HOH 21 40 21 HOH TIP A . B 2 HOH 22 41 22 HOH TIP A . B 2 HOH 23 42 23 HOH TIP A . B 2 HOH 24 43 24 HOH TIP A . B 2 HOH 25 44 25 HOH TIP A . B 2 HOH 26 45 26 HOH TIP A . B 2 HOH 27 46 27 HOH TIP A . B 2 HOH 28 47 28 HOH TIP A . B 2 HOH 29 48 29 HOH TIP A . B 2 HOH 30 49 30 HOH TIP A . B 2 HOH 31 50 31 HOH TIP A . B 2 HOH 32 51 32 HOH TIP A . B 2 HOH 33 52 33 HOH TIP A . B 2 HOH 34 53 34 HOH TIP A . B 2 HOH 35 54 35 HOH TIP A . B 2 HOH 36 55 36 HOH TIP A . B 2 HOH 37 56 37 HOH TIP A . B 2 HOH 38 57 38 HOH TIP A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5BU _pdbx_struct_mod_residue.label_seq_id 16 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 5BU _pdbx_struct_mod_residue.auth_seq_id 16 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id U _pdbx_struct_mod_residue.details "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-12-07 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _software.name CNS _software.classification refinement _software.version 1.0 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_database_remark.id 99 _pdbx_database_remark.text ;Short contacts exhibited by residue 19 are due to the fact that residue 19 was not included in refinement and was left unrefined. ; # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O2'" A A 3 ? ? 1_555 "C4'" A C 19 ? ? 5_555 0.89 2 1 "O2'" A A 3 ? ? 1_555 "C3'" A C 19 ? ? 5_555 1.05 3 1 "C4'" A A 3 ? ? 1_555 "O2'" A C 19 ? ? 5_555 1.20 4 1 "C3'" A A 3 ? ? 1_555 "O2'" A C 19 ? ? 5_555 1.36 5 1 "O3'" A A 3 ? ? 1_555 "O2'" A C 19 ? ? 5_555 1.44 6 1 "C2'" A A 3 ? ? 1_555 "O3'" A C 19 ? ? 5_555 1.55 7 1 "O3'" A A 3 ? ? 1_555 "C2'" A C 19 ? ? 5_555 1.62 8 1 "O2'" A A 3 ? ? 1_555 "O3'" A C 19 ? ? 5_555 1.64 9 1 "O2'" A A 3 ? ? 1_555 "C5'" A C 19 ? ? 5_555 1.74 10 1 "C2'" A A 3 ? ? 1_555 "C3'" A C 19 ? ? 5_555 1.90 11 1 "C2'" A A 3 ? ? 1_555 "C4'" A C 19 ? ? 5_555 1.91 12 1 "C5'" A A 3 ? ? 1_555 "O2'" A C 19 ? ? 5_555 1.92 13 1 "O3'" A A 3 ? ? 1_555 "O3'" A C 19 ? ? 5_555 1.99 14 1 "C3'" A A 3 ? ? 1_555 "O3'" A C 19 ? ? 5_555 2.04 15 1 "O3'" A A 3 ? ? 1_555 "C3'" A C 19 ? ? 5_555 2.11 16 1 "C3'" A A 3 ? ? 1_555 "C2'" A C 19 ? ? 5_555 2.13 17 1 "C5'" A U 4 ? ? 1_555 "O3'" A C 19 ? ? 5_555 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 19 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 C _pdbx_validate_rmsd_bond.auth_seq_id_2 19 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.468 _pdbx_validate_rmsd_bond.bond_target_value 1.593 _pdbx_validate_rmsd_bond.bond_deviation -0.125 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.010 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 11 ? ? "C1'" A G 11 ? ? N9 A G 11 ? ? 112.84 108.50 4.34 0.70 N 2 1 "O5'" A C 19 ? ? P A C 19 ? ? OP2 A C 19 ? ? 88.43 105.70 -17.27 0.90 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1KFO 'double helix' 1KFO 'a-form double helix' 1KFO 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 18 7_555 -0.475 -0.350 -0.181 -8.259 -10.553 -0.741 1 A_G1:C18_A A 1 ? A 18 ? 19 1 1 A A 2 1_555 A C 17 7_555 -2.067 -0.541 0.326 6.121 -15.481 11.318 2 A_A2:C17_A A 2 ? A 17 ? ? 1 1 A A 3 1_555 A 5BU 16 7_555 -0.007 -0.197 -0.021 1.367 -17.615 1.511 3 A_A3:5BU16_A A 3 ? A 16 ? 20 1 1 A U 4 1_555 A A 15 7_555 -0.048 -0.099 0.109 2.640 -14.016 6.252 4 A_U4:A15_A A 4 ? A 15 ? 20 1 1 A G 5 1_555 A C 14 7_555 -0.170 -0.194 -0.003 -0.543 -10.029 2.008 5 A_G5:C14_A A 5 ? A 14 ? 19 1 1 A C 6 1_555 A G 13 7_555 0.227 -0.215 -0.079 1.484 -12.541 -0.181 6 A_C6:G13_A A 6 ? A 13 ? 19 1 1 A C 7 1_555 A A 12 7_555 2.480 -0.508 0.194 -0.534 -8.005 7.567 7 A_C7:A12_A A 7 ? A 12 ? ? 1 1 A U 8 1_555 A G 11 7_555 2.339 -0.643 0.011 4.816 -13.947 -3.237 8 A_U8:G11_A A 8 ? A 11 ? 28 ? 1 A G 9 1_555 A C 10 7_555 -0.162 -0.165 0.047 -0.476 -6.572 -0.086 9 A_G9:C10_A A 9 ? A 10 ? 19 1 1 A C 10 1_555 A G 9 7_555 0.162 -0.165 0.047 0.476 -6.572 -0.086 10 A_C10:G9_A A 10 ? A 9 ? 19 1 1 A G 11 1_555 A U 8 7_555 -2.339 -0.643 0.011 -4.816 -13.947 -3.237 11 A_G11:U8_A A 11 ? A 8 ? 28 ? 1 A A 12 1_555 A C 7 7_555 -2.480 -0.508 0.194 0.534 -8.005 7.567 12 A_A12:C7_A A 12 ? A 7 ? ? 1 1 A G 13 1_555 A C 6 7_555 -0.227 -0.215 -0.079 -1.484 -12.541 -0.181 13 A_G13:C6_A A 13 ? A 6 ? 19 1 1 A C 14 1_555 A G 5 7_555 0.170 -0.194 -0.003 0.543 -10.029 2.008 14 A_C14:G5_A A 14 ? A 5 ? 19 1 1 A A 15 1_555 A U 4 7_555 0.048 -0.099 0.109 -2.640 -14.016 6.252 15 A_A15:U4_A A 15 ? A 4 ? 20 1 1 A 5BU 16 1_555 A A 3 7_555 0.007 -0.197 -0.021 -1.367 -17.615 1.511 16 A_5BU16:A3_A A 16 ? A 3 ? 20 1 1 A C 17 1_555 A A 2 7_555 2.067 -0.541 0.326 -6.121 -15.481 11.318 17 A_C17:A2_A A 17 ? A 2 ? ? 1 1 A C 18 1_555 A G 1 7_555 0.475 -0.350 -0.181 8.259 -10.553 -0.741 18 A_C18:G1_A A 18 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 18 7_555 A A 2 1_555 A C 17 7_555 0.223 -1.770 2.702 -6.421 9.611 28.556 -4.720 -1.344 1.925 18.553 12.394 30.761 1 AA_G1A2:C17C18_AA A 1 ? A 18 ? A 2 ? A 17 ? 1 A A 2 1_555 A C 17 7_555 A A 3 1_555 A 5BU 16 7_555 -0.358 -0.655 3.455 0.623 6.643 38.119 -1.837 0.619 3.293 10.076 -0.945 38.677 2 AA_A2A3:5BU16C17_AA A 2 ? A 17 ? A 3 ? A 16 ? 1 A A 3 1_555 A 5BU 16 7_555 A U 4 1_555 A A 15 7_555 0.463 -1.290 3.238 0.272 6.189 32.172 -3.305 -0.777 2.949 11.039 -0.485 32.748 3 AA_A3U4:A155BU16_AA A 3 ? A 16 ? A 4 ? A 15 ? 1 A U 4 1_555 A A 15 7_555 A G 5 1_555 A C 14 7_555 -0.371 -1.511 3.221 -0.612 10.245 31.133 -4.297 0.561 2.612 18.470 1.104 32.741 4 AA_U4G5:C14A15_AA A 4 ? A 15 ? A 5 ? A 14 ? 1 A G 5 1_555 A C 14 7_555 A C 6 1_555 A G 13 7_555 -0.310 -1.534 3.246 -0.757 6.530 32.761 -3.695 0.420 2.901 11.434 1.325 33.397 5 AA_G5C6:G13C14_AA A 5 ? A 14 ? A 6 ? A 13 ? 1 A C 6 1_555 A G 13 7_555 A C 7 1_555 A A 12 7_555 0.180 -1.295 3.396 -1.091 7.709 38.857 -2.815 -0.393 3.088 11.448 1.620 39.600 6 AA_C6C7:A12G13_AA A 6 ? A 13 ? A 7 ? A 12 ? 1 A C 7 1_555 A A 12 7_555 A U 8 1_555 A G 11 7_555 -0.284 -1.765 2.985 7.233 7.941 32.838 -4.014 1.424 2.392 13.601 -12.388 34.504 7 AA_C7U8:G11A12_AA A 7 ? A 12 ? A 8 ? A 11 ? 1 A U 8 1_555 A G 11 7_555 A G 9 1_555 A C 10 7_555 0.138 -2.611 3.243 0.706 9.674 16.824 -11.499 -0.136 1.528 30.033 -2.191 19.403 8 AA_U8G9:C10G11_AA A 8 ? A 11 ? A 9 ? A 10 ? 1 A G 9 1_555 A C 10 7_555 A C 10 1_555 A G 9 7_555 0.000 -2.302 3.267 0.000 2.246 32.517 -4.482 0.000 3.105 4.006 0.000 32.592 9 AA_G9C10:G9C10_AA A 9 ? A 10 ? A 10 ? A 9 ? 1 A C 10 1_555 A G 9 7_555 A G 11 1_555 A U 8 7_555 -0.138 -2.611 3.243 -0.706 9.674 16.824 -11.499 0.136 1.528 30.034 2.191 19.403 10 AA_C10G11:U8G9_AA A 10 ? A 9 ? A 11 ? A 8 ? 1 A G 11 1_555 A U 8 7_555 A A 12 1_555 A C 7 7_555 0.284 -1.765 2.985 -7.233 7.941 32.838 -4.014 -1.424 2.392 13.601 12.388 34.504 11 AA_G11A12:C7U8_AA A 11 ? A 8 ? A 12 ? A 7 ? 1 A A 12 1_555 A C 7 7_555 A G 13 1_555 A C 6 7_555 -0.180 -1.295 3.396 1.091 7.709 38.857 -2.815 0.393 3.088 11.448 -1.620 39.600 12 AA_A12G13:C6C7_AA A 12 ? A 7 ? A 13 ? A 6 ? 1 A G 13 1_555 A C 6 7_555 A C 14 1_555 A G 5 7_555 0.310 -1.534 3.246 0.757 6.530 32.761 -3.695 -0.420 2.901 11.434 -1.325 33.397 13 AA_G13C14:G5C6_AA A 13 ? A 6 ? A 14 ? A 5 ? 1 A C 14 1_555 A G 5 7_555 A A 15 1_555 A U 4 7_555 0.371 -1.511 3.221 0.612 10.245 31.133 -4.297 -0.561 2.612 18.470 -1.104 32.741 14 AA_C14A15:U4G5_AA A 14 ? A 5 ? A 15 ? A 4 ? 1 A A 15 1_555 A U 4 7_555 A 5BU 16 1_555 A A 3 7_555 -0.463 -1.290 3.238 -0.272 6.189 32.172 -3.305 0.777 2.949 11.039 0.485 32.748 15 AA_A155BU16:A3U4_AA A 15 ? A 4 ? A 16 ? A 3 ? 1 A 5BU 16 1_555 A A 3 7_555 A C 17 1_555 A A 2 7_555 0.358 -0.655 3.455 -0.623 6.643 38.119 -1.837 -0.619 3.293 10.076 0.945 38.677 16 AA_5BU16C17:A2A3_AA A 16 ? A 3 ? A 17 ? A 2 ? 1 A C 17 1_555 A A 2 7_555 A C 18 1_555 A G 1 7_555 -0.223 -1.770 2.702 6.421 9.611 28.556 -4.720 1.344 1.925 18.553 -12.394 30.761 17 AA_C17C18:G1A2_AA A 17 ? A 2 ? A 18 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #