data_237D # _entry.id 237D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 237D pdb_0000237d 10.2210/pdb237d/pdb RCSB UDJ031 ? ? WWPDB D_1000177625 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-03-22 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 237D _pdbx_database_status.recvd_initial_deposition_date 1995-09-28 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Spink, N.' 1 'Nunn, C.M.' 2 'Vojtechovsky, J.' 3 'Berman, H.M.' 4 'Neidle, S.' 5 # _citation.id primary _citation.title 'Crystal structure of a DNA decamer showing a novel pseudo four-way helix-helix junction.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 92 _citation.page_first 10767 _citation.page_last 10771 _citation.year 1995 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7479880 _citation.pdbx_database_id_DOI 10.1073/pnas.92.23.10767 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Spink, N.' 1 ? primary 'Nunn, C.M.' 2 ? primary 'Vojtechovsky, J.' 3 ? primary 'Berman, H.M.' 4 ? primary 'Neidle, S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') ; 3045.005 1 ? ? ? ? 2 water nat water 18.015 48 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DA)(DA)(DT)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCAATTGCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DA n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DC n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 11 11 HOH HOH A . B 2 HOH 2 12 12 HOH HOH A . B 2 HOH 3 13 13 HOH HOH A . B 2 HOH 4 14 14 HOH HOH A . B 2 HOH 5 15 15 HOH HOH A . B 2 HOH 6 16 16 HOH HOH A . B 2 HOH 7 17 17 HOH HOH A . B 2 HOH 8 18 18 HOH HOH A . B 2 HOH 9 19 19 HOH HOH A . B 2 HOH 10 20 20 HOH HOH A . B 2 HOH 11 21 21 HOH HOH A . B 2 HOH 12 22 22 HOH HOH A . B 2 HOH 13 23 23 HOH HOH A . B 2 HOH 14 24 24 HOH HOH A . B 2 HOH 15 25 25 HOH HOH A . B 2 HOH 16 26 26 HOH HOH A . B 2 HOH 17 27 27 HOH HOH A . B 2 HOH 18 28 28 HOH HOH A . B 2 HOH 19 29 29 HOH HOH A . B 2 HOH 20 30 30 HOH HOH A . B 2 HOH 21 31 31 HOH HOH A . B 2 HOH 22 32 32 HOH HOH A . B 2 HOH 23 33 33 HOH HOH A . B 2 HOH 24 34 34 HOH HOH A . B 2 HOH 25 35 35 HOH HOH A . B 2 HOH 26 36 36 HOH HOH A . B 2 HOH 27 37 37 HOH HOH A . B 2 HOH 28 38 38 HOH HOH A . B 2 HOH 29 39 39 HOH HOH A . B 2 HOH 30 40 40 HOH HOH A . B 2 HOH 31 41 41 HOH HOH A . B 2 HOH 32 42 42 HOH HOH A . B 2 HOH 33 43 43 HOH HOH A . B 2 HOH 34 44 44 HOH HOH A . B 2 HOH 35 45 45 HOH HOH A . B 2 HOH 36 46 46 HOH HOH A . B 2 HOH 37 47 47 HOH HOH A . B 2 HOH 38 48 48 HOH HOH A . B 2 HOH 39 49 49 HOH HOH A . B 2 HOH 40 50 50 HOH HOH A . B 2 HOH 41 51 51 HOH HOH A . B 2 HOH 42 52 52 HOH HOH A . B 2 HOH 43 53 53 HOH HOH A . B 2 HOH 44 54 54 HOH HOH A . B 2 HOH 45 55 55 HOH HOH A . B 2 HOH 46 56 56 HOH HOH A . B 2 HOH 47 57 57 HOH HOH A . B 2 HOH 48 58 58 HOH HOH A . # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 237D _cell.length_a 27.010 _cell.length_b 39.260 _cell.length_c 54.060 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 237D _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 # _exptl.entry_id 237D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.73 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 287.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 287.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 BERENIL ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 294.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type XENTRONICS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 237D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.200 _reflns.number_obs 1521 _reflns.number_all 10180 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 237D _refine.ls_number_reflns_obs 957 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 94.000 _refine.ls_R_factor_obs 0.2120000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2120000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 250 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.30 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 237D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 237D _struct.title 'CRYSTAL STRUCTURE OF A DNA DECAMER SHOWING A NOVEL PSEUDO FOUR-WAY HELIX-HELIX JUNCTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 237D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, FLIPPED-OUT BASES, INTERMOLECULAR BASE TRIPLET, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 237D _struct_ref.pdbx_db_accession 237D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 237D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 237D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x,-y,-z+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 27.0300000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 9 N3 ? ? A DG 2 A DC 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 9 O2 ? ? A DG 2 A DC 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 9 N4 ? ? A DG 2 A DC 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 3 A DG 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 3 A DG 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 3 A DG 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 4 A DT 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 4 A DT 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 5 A DT 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 5 A DT 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 6 A DA 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 6 A DA 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 7 A DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 7 A DA 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 8 A DC 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 8 A DC 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 8 A DC 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 9 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 9 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 9 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 A DC 1 ? ? N4 A DC 1 ? ? 1.252 1.335 -0.083 0.009 N 2 1 C5 A DC 1 ? ? C6 A DC 1 ? ? 1.287 1.339 -0.052 0.008 N 3 1 C5 A DG 2 ? ? C6 A DG 2 ? ? 1.354 1.419 -0.065 0.010 N 4 1 C5 A DA 4 ? ? C6 A DA 4 ? ? 1.349 1.406 -0.057 0.009 N 5 1 C5 A DG 8 ? ? C6 A DG 8 ? ? 1.343 1.419 -0.076 0.010 N 6 1 "C1'" A DG 10 ? ? N9 A DG 10 ? ? 1.277 1.468 -0.191 0.014 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DT 6 ? ? 140.89 119.70 21.19 1.20 Y 2 1 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? 92.90 109.70 -16.80 2.50 N 3 1 N9 A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 124.66 114.30 10.36 1.40 N 4 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 100.73 108.00 -7.27 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 2 ? ? 0.123 'SIDE CHAIN' 2 1 DG A 8 ? ? 0.071 'SIDE CHAIN' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 237D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 9 8_555 -0.294 -0.363 -0.240 -9.540 -2.318 -1.901 1 A_DG2:DC9_A A 2 ? A 9 ? 19 1 1 A DC 3 1_555 A DG 8 8_555 -0.467 -0.306 -0.102 -1.607 -4.299 -4.458 2 A_DC3:DG8_A A 3 ? A 8 ? 19 1 1 A DA 4 1_555 A DT 7 8_555 0.796 -0.186 -0.137 3.531 -12.522 -5.745 3 A_DA4:DT7_A A 4 ? A 7 ? 20 1 1 A DA 5 1_555 A DT 6 8_555 -0.327 -0.356 0.048 -1.710 -14.275 3.044 4 A_DA5:DT6_A A 5 ? A 6 ? 20 1 1 A DT 6 1_555 A DA 5 8_555 0.327 -0.356 0.048 1.710 -14.275 3.044 5 A_DT6:DA5_A A 6 ? A 5 ? 20 1 1 A DT 7 1_555 A DA 4 8_555 -0.796 -0.186 -0.137 -3.531 -12.522 -5.745 6 A_DT7:DA4_A A 7 ? A 4 ? 20 1 1 A DG 8 1_555 A DC 3 8_555 0.467 -0.306 -0.102 1.608 -4.299 -4.458 7 A_DG8:DC3_A A 8 ? A 3 ? 19 1 1 A DC 9 1_555 A DG 2 8_555 0.294 -0.363 -0.240 9.540 -2.318 -1.901 8 A_DC9:DG2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 9 8_555 A DC 3 1_555 A DG 8 8_555 0.073 0.538 3.182 -1.519 -1.355 37.430 1.009 -0.306 3.156 -2.110 2.364 37.483 1 AA_DG2DC3:DG8DC9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DC 3 1_555 A DG 8 8_555 A DA 4 1_555 A DT 7 8_555 -0.200 0.994 3.334 1.606 3.871 38.103 1.014 0.513 3.404 5.907 -2.451 38.324 2 AA_DC3DA4:DT7DG8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DA 4 1_555 A DT 7 8_555 A DA 5 1_555 A DT 6 8_555 0.045 -0.325 3.301 -3.825 5.318 30.010 -1.660 -0.837 3.168 10.119 7.277 30.701 3 AA_DA4DA5:DT6DT7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DA 5 1_555 A DT 6 8_555 A DT 6 1_555 A DA 5 8_555 0.000 -0.451 3.247 0.000 -7.159 41.529 0.114 0.000 3.277 -10.007 0.000 42.115 4 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DT 6 1_555 A DA 5 8_555 A DT 7 1_555 A DA 4 8_555 -0.045 -0.325 3.301 3.825 5.318 30.010 -1.660 0.837 3.168 10.119 -7.277 30.701 5 AA_DT6DT7:DA4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DT 7 1_555 A DA 4 8_555 A DG 8 1_555 A DC 3 8_555 0.200 0.994 3.334 -1.606 3.871 38.103 1.014 -0.513 3.404 5.907 2.451 38.324 6 AA_DT7DG8:DC3DA4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DG 8 1_555 A DC 3 8_555 A DC 9 1_555 A DG 2 8_555 -0.073 0.538 3.182 1.519 -1.355 37.430 1.009 0.306 3.156 -2.110 -2.364 37.483 7 AA_DG8DC9:DG2DC3_AA A 8 ? A 3 ? A 9 ? A 2 ? # _atom_sites.entry_id 237D _atom_sites.fract_transf_matrix[1][1] 0.037023 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025471 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018498 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 12.017 8.337 30.880 0.73 35.99 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 11.981 7.780 29.566 0.73 33.46 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 13.256 7.042 29.220 0.73 32.43 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 13.186 5.653 29.637 0.73 31.41 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 13.554 6.987 27.722 0.73 32.92 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 14.934 6.706 27.545 0.73 36.10 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 12.800 5.757 27.273 0.73 31.06 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 12.812 4.834 28.510 0.73 31.28 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 11.417 4.523 28.676 0.73 30.82 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 10.902 3.198 28.585 0.73 29.75 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 11.685 2.217 28.517 0.73 30.08 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 9.556 3.055 28.594 0.73 29.71 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 8.793 4.150 28.730 0.73 30.02 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 7.545 4.051 28.733 0.73 30.18 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 9.316 5.449 28.879 0.73 29.66 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.596 5.585 28.856 0.73 29.89 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 15.384 5.489 26.593 1.00 37.69 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 16.851 5.232 26.853 1.00 36.84 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 14.918 5.925 25.235 1.00 40.15 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 14.502 4.214 26.993 1.00 31.24 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 15.068 3.170 27.762 1.00 32.59 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 14.829 1.843 27.089 1.00 29.66 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 13.411 1.759 26.829 1.00 27.22 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 15.521 1.646 25.734 1.00 29.11 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 16.241 0.393 25.737 1.00 30.71 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 14.368 1.671 24.723 1.00 26.01 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 13.189 1.190 25.546 1.00 20.61 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 11.831 1.573 25.187 1.00 10.24 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 11.358 2.842 25.052 1.00 11.01 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 10.048 2.897 25.031 1.00 6.81 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 9.654 1.588 25.094 1.00 2.41 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 8.399 1.086 25.169 1.00 5.17 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 7.340 1.754 25.272 1.00 7.94 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 8.382 -0.326 25.159 1.00 2.00 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 9.510 -1.106 25.130 1.00 5.39 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 9.359 -2.458 25.109 1.00 2.92 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 10.745 -0.590 25.117 1.00 6.10 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 10.731 0.752 25.101 1.00 5.72 ? 2 DG A C4 1 ATOM 39 P P . DC A 1 3 ? 17.280 0.063 24.544 1.00 33.39 ? 3 DC A P 1 ATOM 40 O OP1 . DC A 1 3 ? 18.652 -0.293 25.056 1.00 33.41 ? 3 DC A OP1 1 ATOM 41 O OP2 . DC A 1 3 ? 17.129 1.257 23.667 1.00 32.01 ? 3 DC A OP2 1 ATOM 42 O "O5'" . DC A 1 3 ? 16.696 -1.264 23.887 1.00 27.27 ? 3 DC A "O5'" 1 ATOM 43 C "C5'" . DC A 1 3 ? 15.307 -1.438 23.854 1.00 24.60 ? 3 DC A "C5'" 1 ATOM 44 C "C4'" . DC A 1 3 ? 14.962 -2.761 23.233 1.00 21.74 ? 3 DC A "C4'" 1 ATOM 45 O "O4'" . DC A 1 3 ? 13.516 -2.734 23.070 1.00 19.12 ? 3 DC A "O4'" 1 ATOM 46 C "C3'" . DC A 1 3 ? 15.511 -2.882 21.823 1.00 23.02 ? 3 DC A "C3'" 1 ATOM 47 O "O3'" . DC A 1 3 ? 15.765 -4.276 21.514 1.00 25.29 ? 3 DC A "O3'" 1 ATOM 48 C "C2'" . DC A 1 3 ? 14.420 -2.188 20.997 1.00 18.07 ? 3 DC A "C2'" 1 ATOM 49 C "C1'" . DC A 1 3 ? 13.130 -2.453 21.756 1.00 12.05 ? 3 DC A "C1'" 1 ATOM 50 N N1 . DC A 1 3 ? 12.196 -1.312 21.803 1.00 7.77 ? 3 DC A N1 1 ATOM 51 C C2 . DC A 1 3 ? 10.807 -1.529 21.927 1.00 7.23 ? 3 DC A C2 1 ATOM 52 O O2 . DC A 1 3 ? 10.392 -2.670 22.165 1.00 9.99 ? 3 DC A O2 1 ATOM 53 N N3 . DC A 1 3 ? 9.964 -0.488 21.814 1.00 4.24 ? 3 DC A N3 1 ATOM 54 C C4 . DC A 1 3 ? 10.473 0.759 21.657 1.00 6.52 ? 3 DC A C4 1 ATOM 55 N N4 . DC A 1 3 ? 9.629 1.834 21.543 1.00 3.02 ? 3 DC A N4 1 ATOM 56 C C5 . DC A 1 3 ? 11.866 0.994 21.611 1.00 3.24 ? 3 DC A C5 1 ATOM 57 C C6 . DC A 1 3 ? 12.677 -0.057 21.684 1.00 6.81 ? 3 DC A C6 1 ATOM 58 P P . DA A 1 4 ? 15.856 -4.783 19.963 1.00 30.50 ? 4 DA A P 1 ATOM 59 O OP1 . DA A 1 4 ? 16.731 -6.002 19.908 1.00 30.44 ? 4 DA A OP1 1 ATOM 60 O OP2 . DA A 1 4 ? 16.184 -3.612 19.058 1.00 29.90 ? 4 DA A OP2 1 ATOM 61 O "O5'" . DA A 1 4 ? 14.375 -5.313 19.627 1.00 26.00 ? 4 DA A "O5'" 1 ATOM 62 C "C5'" . DA A 1 4 ? 13.851 -6.394 20.364 1.00 21.83 ? 4 DA A "C5'" 1 ATOM 63 C "C4'" . DA A 1 4 ? 12.520 -6.823 19.807 1.00 21.93 ? 4 DA A "C4'" 1 ATOM 64 O "O4'" . DA A 1 4 ? 11.576 -5.730 19.710 1.00 20.82 ? 4 DA A "O4'" 1 ATOM 65 C "C3'" . DA A 1 4 ? 12.581 -7.372 18.413 1.00 23.70 ? 4 DA A "C3'" 1 ATOM 66 O "O3'" . DA A 1 4 ? 11.437 -8.201 18.307 1.00 27.33 ? 4 DA A "O3'" 1 ATOM 67 C "C2'" . DA A 1 4 ? 12.446 -6.099 17.594 1.00 22.01 ? 4 DA A "C2'" 1 ATOM 68 C "C1'" . DA A 1 4 ? 11.383 -5.345 18.369 1.00 16.08 ? 4 DA A "C1'" 1 ATOM 69 N N9 . DA A 1 4 ? 11.475 -3.881 18.304 1.00 9.93 ? 4 DA A N9 1 ATOM 70 C C8 . DA A 1 4 ? 12.571 -3.061 18.112 1.00 6.78 ? 4 DA A C8 1 ATOM 71 N N7 . DA A 1 4 ? 12.257 -1.765 18.062 1.00 2.13 ? 4 DA A N7 1 ATOM 72 C C5 . DA A 1 4 ? 10.895 -1.761 18.264 1.00 2.00 ? 4 DA A C5 1 ATOM 73 C C6 . DA A 1 4 ? 10.018 -0.738 18.335 1.00 2.00 ? 4 DA A C6 1 ATOM 74 N N6 . DA A 1 4 ? 10.389 0.515 18.212 1.00 2.00 ? 4 DA A N6 1 ATOM 75 N N1 . DA A 1 4 ? 8.719 -1.028 18.539 1.00 2.16 ? 4 DA A N1 1 ATOM 76 C C2 . DA A 1 4 ? 8.392 -2.340 18.671 1.00 2.24 ? 4 DA A C2 1 ATOM 77 N N3 . DA A 1 4 ? 9.157 -3.399 18.618 1.00 2.00 ? 4 DA A N3 1 ATOM 78 C C4 . DA A 1 4 ? 10.402 -3.037 18.412 1.00 2.00 ? 4 DA A C4 1 ATOM 79 P P . DA A 1 5 ? 11.084 -8.892 16.912 1.00 32.13 ? 5 DA A P 1 ATOM 80 O OP1 . DA A 1 5 ? 10.632 -10.309 17.183 1.00 30.20 ? 5 DA A OP1 1 ATOM 81 O OP2 . DA A 1 5 ? 12.243 -8.606 15.982 1.00 30.03 ? 5 DA A OP2 1 ATOM 82 O "O5'" . DA A 1 5 ? 9.735 -8.145 16.541 1.00 29.15 ? 5 DA A "O5'" 1 ATOM 83 C "C5'" . DA A 1 5 ? 8.700 -8.190 17.507 1.00 27.39 ? 5 DA A "C5'" 1 ATOM 84 C "C4'" . DA A 1 5 ? 7.403 -7.786 16.880 1.00 26.27 ? 5 DA A "C4'" 1 ATOM 85 O "O4'" . DA A 1 5 ? 7.419 -6.341 16.792 1.00 23.90 ? 5 DA A "O4'" 1 ATOM 86 C "C3'" . DA A 1 5 ? 7.428 -8.323 15.461 1.00 29.30 ? 5 DA A "C3'" 1 ATOM 87 O "O3'" . DA A 1 5 ? 6.266 -9.030 15.137 1.00 34.95 ? 5 DA A "O3'" 1 ATOM 88 C "C2'" . DA A 1 5 ? 7.734 -7.106 14.583 1.00 24.58 ? 5 DA A "C2'" 1 ATOM 89 C "C1'" . DA A 1 5 ? 7.432 -5.903 15.450 1.00 17.06 ? 5 DA A "C1'" 1 ATOM 90 N N9 . DA A 1 5 ? 8.369 -4.786 15.344 1.00 8.32 ? 5 DA A N9 1 ATOM 91 C C8 . DA A 1 5 ? 9.731 -4.759 15.253 1.00 8.66 ? 5 DA A C8 1 ATOM 92 N N7 . DA A 1 5 ? 10.225 -3.518 15.160 1.00 8.63 ? 5 DA A N7 1 ATOM 93 C C5 . DA A 1 5 ? 9.099 -2.707 15.205 1.00 2.00 ? 5 DA A C5 1 ATOM 94 C C6 . DA A 1 5 ? 8.912 -1.304 15.118 1.00 2.00 ? 5 DA A C6 1 ATOM 95 N N6 . DA A 1 5 ? 9.858 -0.382 14.968 1.00 2.00 ? 5 DA A N6 1 ATOM 96 N N1 . DA A 1 5 ? 7.669 -0.861 15.170 1.00 2.00 ? 5 DA A N1 1 ATOM 97 C C2 . DA A 1 5 ? 6.664 -1.727 15.245 1.00 4.70 ? 5 DA A C2 1 ATOM 98 N N3 . DA A 1 5 ? 6.709 -3.059 15.305 1.00 4.01 ? 5 DA A N3 1 ATOM 99 C C4 . DA A 1 5 ? 7.965 -3.477 15.302 1.00 2.00 ? 5 DA A C4 1 ATOM 100 P P . DT A 1 6 ? 5.105 -9.030 14.110 1.00 33.56 ? 6 DT A P 1 ATOM 101 O OP1 . DT A 1 6 ? 4.224 -10.125 14.456 1.00 32.92 ? 6 DT A OP1 1 ATOM 102 O OP2 . DT A 1 6 ? 5.951 -8.994 12.837 1.00 35.07 ? 6 DT A OP2 1 ATOM 103 O "O5'" . DT A 1 6 ? 4.349 -7.695 14.218 1.00 27.12 ? 6 DT A "O5'" 1 ATOM 104 C "C5'" . DT A 1 6 ? 4.681 -6.627 13.378 1.00 29.10 ? 6 DT A "C5'" 1 ATOM 105 C "C4'" . DT A 1 6 ? 3.568 -5.620 13.421 1.00 25.02 ? 6 DT A "C4'" 1 ATOM 106 O "O4'" . DT A 1 6 ? 4.175 -4.331 13.588 1.00 24.25 ? 6 DT A "O4'" 1 ATOM 107 C "C3'" . DT A 1 6 ? 2.806 -5.536 12.122 1.00 24.19 ? 6 DT A "C3'" 1 ATOM 108 O "O3'" . DT A 1 6 ? 1.499 -5.048 12.311 1.00 26.08 ? 6 DT A "O3'" 1 ATOM 109 C "C2'" . DT A 1 6 ? 3.570 -4.499 11.328 1.00 22.43 ? 6 DT A "C2'" 1 ATOM 110 C "C1'" . DT A 1 6 ? 4.252 -3.637 12.371 1.00 17.56 ? 6 DT A "C1'" 1 ATOM 111 N N1 . DT A 1 6 ? 5.671 -3.335 12.127 1.00 9.41 ? 6 DT A N1 1 ATOM 112 C C2 . DT A 1 6 ? 6.036 -2.016 12.144 1.00 9.92 ? 6 DT A C2 1 ATOM 113 O O2 . DT A 1 6 ? 5.245 -1.062 12.332 1.00 8.73 ? 6 DT A O2 1 ATOM 114 N N3 . DT A 1 6 ? 7.368 -1.813 11.921 1.00 5.78 ? 6 DT A N3 1 ATOM 115 C C4 . DT A 1 6 ? 8.337 -2.709 11.697 1.00 7.15 ? 6 DT A C4 1 ATOM 116 O O4 . DT A 1 6 ? 9.479 -2.319 11.539 1.00 7.48 ? 6 DT A O4 1 ATOM 117 C C5 . DT A 1 6 ? 7.912 -4.051 11.685 1.00 6.40 ? 6 DT A C5 1 ATOM 118 C C7 . DT A 1 6 ? 8.947 -5.102 11.468 1.00 6.42 ? 6 DT A C7 1 ATOM 119 C C6 . DT A 1 6 ? 6.599 -4.311 11.892 1.00 6.32 ? 6 DT A C6 1 ATOM 120 P P . DT A 1 7 ? 0.552 -4.889 11.020 1.00 30.31 ? 7 DT A P 1 ATOM 121 O OP1 . DT A 1 7 ? -0.894 -4.704 11.419 1.00 27.58 ? 7 DT A OP1 1 ATOM 122 O OP2 . DT A 1 7 ? 0.979 -6.083 10.194 1.00 28.55 ? 7 DT A OP2 1 ATOM 123 O "O5'" . DT A 1 7 ? 0.999 -3.500 10.369 1.00 26.52 ? 7 DT A "O5'" 1 ATOM 124 C "C5'" . DT A 1 7 ? 0.572 -2.322 11.011 1.00 25.09 ? 7 DT A "C5'" 1 ATOM 125 C "C4'" . DT A 1 7 ? 0.917 -1.104 10.204 1.00 25.40 ? 7 DT A "C4'" 1 ATOM 126 O "O4'" . DT A 1 7 ? 2.345 -0.880 10.130 1.00 24.79 ? 7 DT A "O4'" 1 ATOM 127 C "C3'" . DT A 1 7 ? 0.434 -1.094 8.763 1.00 26.01 ? 7 DT A "C3'" 1 ATOM 128 O "O3'" . DT A 1 7 ? 0.111 0.292 8.492 1.00 29.14 ? 7 DT A "O3'" 1 ATOM 129 C "C2'" . DT A 1 7 ? 1.690 -1.539 8.020 1.00 22.53 ? 7 DT A "C2'" 1 ATOM 130 C "C1'" . DT A 1 7 ? 2.725 -0.739 8.775 1.00 16.60 ? 7 DT A "C1'" 1 ATOM 131 N N1 . DT A 1 7 ? 4.118 -1.163 8.678 1.00 8.83 ? 7 DT A N1 1 ATOM 132 C C2 . DT A 1 7 ? 4.997 -0.149 8.713 1.00 6.53 ? 7 DT A C2 1 ATOM 133 O O2 . DT A 1 7 ? 4.622 0.984 8.821 1.00 13.34 ? 7 DT A O2 1 ATOM 134 N N3 . DT A 1 7 ? 6.297 -0.473 8.637 1.00 3.18 ? 7 DT A N3 1 ATOM 135 C C4 . DT A 1 7 ? 6.805 -1.743 8.533 1.00 7.16 ? 7 DT A C4 1 ATOM 136 O O4 . DT A 1 7 ? 8.046 -1.899 8.485 1.00 8.05 ? 7 DT A O4 1 ATOM 137 C C5 . DT A 1 7 ? 5.789 -2.813 8.484 1.00 4.82 ? 7 DT A C5 1 ATOM 138 C C7 . DT A 1 7 ? 6.218 -4.223 8.298 1.00 2.98 ? 7 DT A C7 1 ATOM 139 C C6 . DT A 1 7 ? 4.512 -2.467 8.577 1.00 6.16 ? 7 DT A C6 1 ATOM 140 P P . DG A 1 8 ? -1.208 0.670 7.658 1.00 29.66 ? 8 DG A P 1 ATOM 141 O OP1 . DG A 1 8 ? -2.163 1.574 8.373 1.00 29.48 ? 8 DG A OP1 1 ATOM 142 O OP2 . DG A 1 8 ? -1.704 -0.621 7.082 1.00 25.77 ? 8 DG A OP2 1 ATOM 143 O "O5'" . DG A 1 8 ? -0.589 1.633 6.571 1.00 27.80 ? 8 DG A "O5'" 1 ATOM 144 C "C5'" . DG A 1 8 ? 0.230 2.753 6.950 1.00 24.47 ? 8 DG A "C5'" 1 ATOM 145 C "C4'" . DG A 1 8 ? 1.002 3.225 5.734 1.00 24.08 ? 8 DG A "C4'" 1 ATOM 146 O "O4'" . DG A 1 8 ? 2.342 2.637 5.703 1.00 19.81 ? 8 DG A "O4'" 1 ATOM 147 C "C3'" . DG A 1 8 ? 0.338 2.678 4.472 1.00 23.68 ? 8 DG A "C3'" 1 ATOM 148 O "O3'" . DG A 1 8 ? 0.747 3.426 3.348 1.00 25.56 ? 8 DG A "O3'" 1 ATOM 149 C "C2'" . DG A 1 8 ? 0.998 1.314 4.406 1.00 18.76 ? 8 DG A "C2'" 1 ATOM 150 C "C1'" . DG A 1 8 ? 2.410 1.761 4.633 1.00 12.55 ? 8 DG A "C1'" 1 ATOM 151 N N9 . DG A 1 8 ? 3.328 0.694 4.945 1.00 8.92 ? 8 DG A N9 1 ATOM 152 C C8 . DG A 1 8 ? 3.001 -0.646 5.034 1.00 7.85 ? 8 DG A C8 1 ATOM 153 N N7 . DG A 1 8 ? 4.055 -1.414 5.119 1.00 3.72 ? 8 DG A N7 1 ATOM 154 C C5 . DG A 1 8 ? 5.120 -0.530 5.148 1.00 2.00 ? 8 DG A C5 1 ATOM 155 C C6 . DG A 1 8 ? 6.428 -0.826 5.210 1.00 4.62 ? 8 DG A C6 1 ATOM 156 O O6 . DG A 1 8 ? 6.923 -2.004 5.218 1.00 7.45 ? 8 DG A O6 1 ATOM 157 N N1 . DG A 1 8 ? 7.235 0.330 5.246 1.00 2.00 ? 8 DG A N1 1 ATOM 158 C C2 . DG A 1 8 ? 6.745 1.611 5.185 1.00 4.64 ? 8 DG A C2 1 ATOM 159 N N2 . DG A 1 8 ? 7.678 2.610 5.193 1.00 2.00 ? 8 DG A N2 1 ATOM 160 N N3 . DG A 1 8 ? 5.429 1.893 5.109 1.00 2.00 ? 8 DG A N3 1 ATOM 161 C C4 . DG A 1 8 ? 4.698 0.774 5.093 1.00 2.00 ? 8 DG A C4 1 ATOM 162 P P . DC A 1 9 ? 0.157 4.896 3.095 1.00 29.72 ? 9 DC A P 1 ATOM 163 O OP1 . DC A 1 9 ? -0.020 5.749 4.287 1.00 30.81 ? 9 DC A OP1 1 ATOM 164 O OP2 . DC A 1 9 ? -1.021 4.660 2.201 1.00 27.37 ? 9 DC A OP2 1 ATOM 165 O "O5'" . DC A 1 9 ? 1.399 5.553 2.343 1.00 25.94 ? 9 DC A "O5'" 1 ATOM 166 C "C5'" . DC A 1 9 ? 2.216 6.475 3.017 1.00 22.23 ? 9 DC A "C5'" 1 ATOM 167 C "C4'" . DC A 1 9 ? 3.567 6.578 2.352 1.00 20.31 ? 9 DC A "C4'" 1 ATOM 168 O "O4'" . DC A 1 9 ? 4.227 5.316 2.497 1.00 18.97 ? 9 DC A "O4'" 1 ATOM 169 C "C3'" . DC A 1 9 ? 3.563 6.866 0.856 1.00 20.88 ? 9 DC A "C3'" 1 ATOM 170 O "O3'" . DC A 1 9 ? 4.610 7.790 0.593 1.00 23.84 ? 9 DC A "O3'" 1 ATOM 171 C "C2'" . DC A 1 9 ? 3.804 5.497 0.234 1.00 17.30 ? 9 DC A "C2'" 1 ATOM 172 C "C1'" . DC A 1 9 ? 4.685 4.831 1.271 1.00 11.93 ? 9 DC A "C1'" 1 ATOM 173 N N1 . DC A 1 9 ? 4.654 3.368 1.372 1.00 4.76 ? 9 DC A N1 1 ATOM 174 C C2 . DC A 1 9 ? 5.819 2.739 1.632 1.00 4.41 ? 9 DC A C2 1 ATOM 175 O O2 . DC A 1 9 ? 6.811 3.444 1.804 1.00 6.63 ? 9 DC A O2 1 ATOM 176 N N3 . DC A 1 9 ? 5.873 1.386 1.732 1.00 2.00 ? 9 DC A N3 1 ATOM 177 C C4 . DC A 1 9 ? 4.769 0.683 1.627 1.00 2.00 ? 9 DC A C4 1 ATOM 178 N N4 . DC A 1 9 ? 4.850 -0.662 1.762 1.00 2.00 ? 9 DC A N4 1 ATOM 179 C C5 . DC A 1 9 ? 3.518 1.310 1.380 1.00 2.01 ? 9 DC A C5 1 ATOM 180 C C6 . DC A 1 9 ? 3.510 2.654 1.242 1.00 4.81 ? 9 DC A C6 1 ATOM 181 P P . DG A 1 10 ? 4.611 8.633 -0.775 1.00 27.69 ? 10 DG A P 1 ATOM 182 O OP1 . DG A 1 10 ? 6.031 9.078 -0.969 1.00 27.63 ? 10 DG A OP1 1 ATOM 183 O OP2 . DG A 1 10 ? 3.500 9.642 -0.838 1.00 22.71 ? 10 DG A OP2 1 ATOM 184 O "O5'" . DG A 1 10 ? 4.454 7.485 -1.869 1.00 29.57 ? 10 DG A "O5'" 1 ATOM 185 C "C5'" . DG A 1 10 ? 5.489 6.494 -1.973 1.00 29.63 ? 10 DG A "C5'" 1 ATOM 186 C "C4'" . DG A 1 10 ? 5.316 5.640 -3.208 1.00 28.81 ? 10 DG A "C4'" 1 ATOM 187 O "O4'" . DG A 1 10 ? 3.947 5.204 -3.433 1.00 26.82 ? 10 DG A "O4'" 1 ATOM 188 C "C3'" . DG A 1 10 ? 5.734 6.310 -4.505 1.00 27.29 ? 10 DG A "C3'" 1 ATOM 189 O "O3'" . DG A 1 10 ? 6.179 5.052 -5.098 1.00 30.87 ? 10 DG A "O3'" 1 ATOM 190 C "C2'" . DG A 1 10 ? 4.430 6.955 -4.972 1.00 23.53 ? 10 DG A "C2'" 1 ATOM 191 C "C1'" . DG A 1 10 ? 3.321 6.061 -4.379 1.00 21.08 ? 10 DG A "C1'" 1 ATOM 192 N N9 . DG A 1 10 ? 2.332 6.489 -3.694 1.00 16.80 ? 10 DG A N9 1 ATOM 193 C C8 . DG A 1 10 ? 1.827 7.767 -3.816 1.00 15.84 ? 10 DG A C8 1 ATOM 194 N N7 . DG A 1 10 ? 0.812 8.000 -3.036 1.00 12.96 ? 10 DG A N7 1 ATOM 195 C C5 . DG A 1 10 ? 0.626 6.799 -2.355 1.00 16.44 ? 10 DG A C5 1 ATOM 196 C C6 . DG A 1 10 ? -0.368 6.400 -1.358 1.00 17.48 ? 10 DG A C6 1 ATOM 197 O O6 . DG A 1 10 ? -1.247 7.105 -0.806 1.00 17.32 ? 10 DG A O6 1 ATOM 198 N N1 . DG A 1 10 ? -0.236 5.043 -1.012 1.00 15.69 ? 10 DG A N1 1 ATOM 199 C C2 . DG A 1 10 ? 0.740 4.196 -1.500 1.00 18.08 ? 10 DG A C2 1 ATOM 200 N N2 . DG A 1 10 ? 0.702 2.931 -1.062 1.00 18.43 ? 10 DG A N2 1 ATOM 201 N N3 . DG A 1 10 ? 1.688 4.557 -2.372 1.00 17.77 ? 10 DG A N3 1 ATOM 202 C C4 . DG A 1 10 ? 1.559 5.855 -2.764 1.00 16.39 ? 10 DG A C4 1 HETATM 203 O O . HOH B 2 . ? 4.952 4.195 4.755 1.00 14.45 ? 11 HOH A O 1 HETATM 204 O O . HOH B 2 . ? 2.473 -3.847 5.663 1.00 32.77 ? 12 HOH A O 1 HETATM 205 O O . HOH B 2 . ? 11.066 -3.972 11.519 1.00 23.20 ? 13 HOH A O 1 HETATM 206 O O . HOH B 2 . ? 3.633 -7.744 9.796 1.00 46.22 ? 14 HOH A O 1 HETATM 207 O O . HOH B 2 . ? 14.494 -0.437 18.353 1.00 34.16 ? 15 HOH A O 1 HETATM 208 O O . HOH B 2 . ? 1.871 1.237 11.386 1.00 35.77 ? 16 HOH A O 1 HETATM 209 O O . HOH B 2 . ? 14.371 3.776 30.746 1.00 50.01 ? 17 HOH A O 1 HETATM 210 O O . HOH B 2 . ? -0.188 -2.046 5.465 1.00 43.60 ? 18 HOH A O 1 HETATM 211 O O . HOH B 2 . ? -2.378 4.131 8.581 1.00 40.88 ? 19 HOH A O 1 HETATM 212 O O . HOH B 2 . ? -4.261 -1.709 8.671 1.00 49.81 ? 20 HOH A O 1 HETATM 213 O O . HOH B 2 . ? 11.942 -11.220 15.488 1.00 20.57 ? 21 HOH A O 1 HETATM 214 O O . HOH B 2 . ? 18.180 -7.201 18.381 1.00 30.20 ? 22 HOH A O 1 HETATM 215 O O . HOH B 2 . ? -1.073 2.280 1.744 1.00 47.54 ? 23 HOH A O 1 HETATM 216 O O . HOH B 2 . ? 1.172 -9.926 13.215 1.00 23.81 ? 24 HOH A O 1 HETATM 217 O O . HOH B 2 . ? 4.123 6.542 5.772 1.00 31.09 ? 25 HOH A O 1 HETATM 218 O O . HOH B 2 . ? 13.899 8.471 23.980 1.00 41.73 ? 26 HOH A O 1 HETATM 219 O O . HOH B 2 . ? 8.854 -9.948 13.207 1.00 49.83 ? 27 HOH A O 1 HETATM 220 O O . HOH B 2 . ? -4.035 4.820 0.956 1.00 28.57 ? 28 HOH A O 1 HETATM 221 O O . HOH B 2 . ? 16.078 6.137 30.565 1.00 46.02 ? 29 HOH A O 1 HETATM 222 O O . HOH B 2 . ? 11.791 4.677 21.066 1.00 40.61 ? 30 HOH A O 1 HETATM 223 O O . HOH B 2 . ? 13.578 4.105 18.721 1.00 36.10 ? 31 HOH A O 1 HETATM 224 O O . HOH B 2 . ? 21.012 -3.126 25.782 1.00 23.41 ? 32 HOH A O 1 HETATM 225 O O . HOH B 2 . ? -4.399 2.331 10.604 1.00 47.51 ? 33 HOH A O 1 HETATM 226 O O . HOH B 2 . ? 11.989 -8.632 12.857 1.00 41.81 ? 34 HOH A O 1 HETATM 227 O O . HOH B 2 . ? 7.990 11.124 -0.282 1.00 34.21 ? 35 HOH A O 1 HETATM 228 O O . HOH B 2 . ? 14.900 9.354 27.200 1.00 47.37 ? 36 HOH A O 1 HETATM 229 O O . HOH B 2 . ? 14.434 8.827 30.525 1.00 43.49 ? 37 HOH A O 1 HETATM 230 O O . HOH B 2 . ? -1.717 -2.077 11.671 1.00 49.24 ? 38 HOH A O 1 HETATM 231 O O . HOH B 2 . ? 17.857 -6.294 22.794 1.00 41.09 ? 39 HOH A O 1 HETATM 232 O O . HOH B 2 . ? 18.215 -3.385 25.551 1.00 28.35 ? 40 HOH A O 1 HETATM 233 O O . HOH B 2 . ? 16.376 3.610 23.724 1.00 42.09 ? 41 HOH A O 1 HETATM 234 O O . HOH B 2 . ? 14.257 4.877 22.996 1.00 36.43 ? 42 HOH A O 1 HETATM 235 O O . HOH B 2 . ? 4.082 2.848 11.151 1.00 35.19 ? 43 HOH A O 1 HETATM 236 O O . HOH B 2 . ? 1.259 9.728 2.919 1.00 27.29 ? 44 HOH A O 1 HETATM 237 O O . HOH B 2 . ? 4.727 3.571 7.744 1.00 41.88 ? 45 HOH A O 1 HETATM 238 O O . HOH B 2 . ? -3.535 6.180 -1.423 1.00 23.77 ? 46 HOH A O 1 HETATM 239 O O . HOH B 2 . ? 6.432 4.640 -8.159 1.00 47.10 ? 47 HOH A O 1 HETATM 240 O O . HOH B 2 . ? 10.306 6.032 31.267 1.00 39.95 ? 48 HOH A O 1 HETATM 241 O O . HOH B 2 . ? 19.906 -4.711 17.164 1.00 33.87 ? 49 HOH A O 1 HETATM 242 O O . HOH B 2 . ? 1.448 4.055 11.079 1.00 41.76 ? 50 HOH A O 1 HETATM 243 O O . HOH B 2 . ? 4.787 -3.678 4.477 1.00 21.71 ? 51 HOH A O 1 HETATM 244 O O . HOH B 2 . ? 18.312 -1.994 22.283 1.00 43.49 ? 52 HOH A O 1 HETATM 245 O O . HOH B 2 . ? 15.864 8.367 33.194 1.00 37.81 ? 53 HOH A O 1 HETATM 246 O O . HOH B 2 . ? 18.356 -3.917 20.622 1.00 43.43 ? 54 HOH A O 1 HETATM 247 O O . HOH B 2 . ? -2.815 -3.709 9.155 1.00 48.07 ? 55 HOH A O 1 HETATM 248 O O . HOH B 2 . ? -1.897 9.533 8.193 1.00 38.22 ? 56 HOH A O 1 HETATM 249 O O . HOH B 2 . ? 1.309 9.493 5.569 1.00 45.52 ? 57 HOH A O 1 HETATM 250 O O . HOH B 2 . ? 1.309 10.409 -2.306 1.00 6.90 ? 58 HOH A O 1 #