data_256D # _entry.id 256D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 256D pdb_0000256d 10.2210/pdb256d/pdb RCSB ADFB72 ? ? WWPDB D_1000177665 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 256D _pdbx_database_status.recvd_initial_deposition_date 1996-03-31 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mooers, B.H.' 1 'Schroth, G.P.' 2 'Baxter, W.W.' 3 'Ho, P.S.' 4 # _citation.id primary _citation.title 'Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 249 _citation.page_first 772 _citation.page_last 784 _citation.year 1995 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7602589 _citation.pdbx_database_id_DOI 10.1006/jmbi.1995.0336 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.' 1 ? primary 'Schroth, G.P.' 2 ? primary 'Baxter, W.W.' 3 ? primary 'Ho, P.S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(5CM)P*GP*CP*GP*C)-3') ; 1824.232 2 ? ? ? ? 2 water nat water 18.015 35 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(5CM)(DG)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 5CM n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 5CM 2 2 2 5CM +C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n B 1 1 DG 1 7 7 DG G B . n B 1 2 5CM 2 8 8 5CM +C B . n B 1 3 DG 3 9 9 DG G B . n B 1 4 DC 4 10 10 DC C B . n B 1 5 DG 5 11 11 DG G B . n B 1 6 DC 6 12 12 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 14 14 HOH HOH A . C 2 HOH 2 15 15 HOH HOH A . C 2 HOH 3 16 16 HOH HOH A . C 2 HOH 4 20 20 HOH HOH A . C 2 HOH 5 22 22 HOH HOH A . C 2 HOH 6 23 23 HOH HOH A . C 2 HOH 7 26 26 HOH HOH A . C 2 HOH 8 27 27 HOH HOH A . C 2 HOH 9 30 30 HOH HOH A . C 2 HOH 10 31 31 HOH HOH A . C 2 HOH 11 32 32 HOH HOH A . C 2 HOH 12 33 33 HOH HOH A . C 2 HOH 13 36 36 HOH HOH A . C 2 HOH 14 37 37 HOH HOH A . C 2 HOH 15 39 39 HOH HOH A . C 2 HOH 16 40 40 HOH HOH A . C 2 HOH 17 41 41 HOH HOH A . C 2 HOH 18 43 43 HOH HOH A . C 2 HOH 19 44 44 HOH HOH A . C 2 HOH 20 46 46 HOH HOH A . D 2 HOH 1 13 13 HOH HOH B . D 2 HOH 2 17 17 HOH HOH B . D 2 HOH 3 18 18 HOH HOH B . D 2 HOH 4 19 19 HOH HOH B . D 2 HOH 5 21 21 HOH HOH B . D 2 HOH 6 24 24 HOH HOH B . D 2 HOH 7 25 25 HOH HOH B . D 2 HOH 8 28 28 HOH HOH B . D 2 HOH 9 29 29 HOH HOH B . D 2 HOH 10 34 34 HOH HOH B . D 2 HOH 11 35 35 HOH HOH B . D 2 HOH 12 38 38 HOH HOH B . D 2 HOH 13 42 42 HOH HOH B . D 2 HOH 14 45 45 HOH HOH B . D 2 HOH 15 47 47 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 XSCANS 'data reduction' . ? 2 # _cell.entry_id 256D _cell.length_a 39.440 _cell.length_b 45.840 _cell.length_c 39.520 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 256D _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 256D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.42 _exptl_crystal.density_Matthews 2.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 MGCL2 ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SIEMENS P4' _diffrn_detector.pdbx_collection_date 1994-02-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 256D _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.100 _reflns.number_obs 1713 _reflns.number_all 2102 _reflns.percent_possible_obs 75.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 256D _refine.ls_number_reflns_obs 1273 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 64.100 _refine.ls_R_factor_obs 0.148 _refine.ls_R_factor_all 0.165 _refine.ls_R_factor_R_work 0.148 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 11.10 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 256D _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 277 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 4.12 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 35.0 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 2.20 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 256D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 256D _struct.title 'ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 256D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 256D _struct_ref.pdbx_db_accession 256D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 256D A 1 ? 6 ? 256D 1 ? 6 ? 1 6 2 1 256D B 1 ? 6 ? 256D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 5CM 2 P ? ? A DG 1 A 5CM 2 1_555 ? ? ? ? ? ? ? 1.630 ? ? covale2 covale both ? A 5CM 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A 5CM 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale3 covale both ? B DG 1 "O3'" ? ? ? 1_555 B 5CM 2 P ? ? B DG 7 B 5CM 8 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? B 5CM 2 "O3'" ? ? ? 1_555 B DG 3 P ? ? B 5CM 8 B DG 9 1_555 ? ? ? ? ? ? ? 1.640 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 5CM 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 5CM 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5CM 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B 5CM 2 N3 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B 5CM 2 O2 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B 5CM 2 N4 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DG 3 ? ? C2 A DG 3 ? ? 1.312 1.373 -0.061 0.008 N 2 1 C5 A DG 3 ? ? N7 A DG 3 ? ? 1.433 1.388 0.045 0.006 N 3 1 C2 A DG 3 ? ? N2 A DG 3 ? ? 1.263 1.341 -0.078 0.010 N 4 1 N1 A DG 5 ? ? C2 A DG 5 ? ? 1.322 1.373 -0.051 0.008 N 5 1 C2 A DG 5 ? ? N2 A DG 5 ? ? 1.277 1.341 -0.064 0.010 N 6 1 "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 1.467 1.516 -0.049 0.008 N 7 1 "C3'" B DC 10 ? ? "C2'" B DC 10 ? ? 1.447 1.516 -0.069 0.008 N 8 1 N3 B DG 11 ? ? C4 B DG 11 ? ? 1.392 1.350 0.042 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? "O4'" A DG 1 ? ? 117.97 109.80 8.17 1.10 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.25 108.30 5.95 0.30 N 3 1 N1 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 114.61 119.90 -5.29 0.60 N 4 1 "O5'" A DC 4 ? ? "C5'" A DC 4 ? ? "C4'" A DC 4 ? ? 104.31 109.40 -5.09 0.80 N 5 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.77 108.30 6.47 0.30 N 6 1 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 100.80 104.50 -3.70 0.40 N 7 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.69 108.30 3.39 0.30 N 8 1 N1 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 115.35 119.90 -4.55 0.60 N 9 1 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 98.00 102.20 -4.20 0.70 N 10 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.04 108.30 4.74 0.30 N 11 1 C6 A DC 6 ? ? N1 A DC 6 ? ? C2 A DC 6 ? ? 122.80 120.30 2.50 0.40 N 12 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 124.70 118.90 5.80 0.60 N 13 1 "C5'" B DG 7 ? ? "C4'" B DG 7 ? ? "O4'" B DG 7 ? ? 116.95 109.80 7.15 1.10 N 14 1 "O5'" B DG 9 ? ? "C5'" B DG 9 ? ? "C4'" B DG 9 ? ? 101.86 109.40 -7.54 0.80 N 15 1 "O4'" B DG 9 ? ? "C4'" B DG 9 ? ? "C3'" B DG 9 ? ? 109.93 106.00 3.93 0.60 N 16 1 "C1'" B DG 9 ? ? "O4'" B DG 9 ? ? "C4'" B DG 9 ? ? 102.32 110.10 -7.78 1.00 N 17 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? "C2'" B DG 9 ? ? 111.07 106.80 4.27 0.50 N 18 1 N1 B DG 9 ? ? C6 B DG 9 ? ? O6 B DG 9 ? ? 116.29 119.90 -3.61 0.60 N 19 1 "C1'" B DC 10 ? ? "O4'" B DC 10 ? ? "C4'" B DC 10 ? ? 103.88 110.10 -6.22 1.00 N 20 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 113.59 108.30 5.29 0.30 N 21 1 C6 B DC 10 ? ? N1 B DC 10 ? ? C2 B DC 10 ? ? 123.40 120.30 3.10 0.40 N 22 1 N1 B DC 10 ? ? C2 B DC 10 ? ? O2 B DC 10 ? ? 123.69 118.90 4.79 0.60 N 23 1 "O4'" B DG 11 ? ? "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? 101.40 104.50 -3.10 0.40 N 24 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 115.38 108.30 7.08 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 5 ? ? 0.094 'SIDE CHAIN' 2 1 DC B 10 ? ? 0.083 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 2 A 5CM 2 ? DC ? 2 B 5CM 2 B 5CM 8 ? DC ? # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 HOH O O N N 109 HOH H1 H N N 110 HOH H2 H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # _ndb_struct_conf_na.entry_id 256D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 6 1_555 -0.858 -0.104 0.153 -8.629 -3.153 -4.531 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1 1 A 5CM 2 1_555 B DG 5 1_555 -0.035 0.040 0.155 2.537 -10.562 -0.917 2 A_5CM2:DG11_B A 2 ? B 11 ? 19 1 1 A DG 3 1_555 B DC 4 1_555 -0.210 -0.033 -0.014 -3.179 -11.153 0.347 3 A_DG3:DC10_B A 3 ? B 10 ? 19 1 1 A DC 4 1_555 B DG 3 1_555 0.046 0.106 0.003 -2.805 -5.726 3.967 4 A_DC4:DG9_B A 4 ? B 9 ? 19 1 1 A DG 5 1_555 B 5CM 2 1_555 -0.395 -0.087 0.267 -1.963 -17.814 -1.348 5 A_DG5:5CM8_B A 5 ? B 8 ? 19 1 1 A DC 6 1_555 B DG 1 1_555 0.654 0.010 -0.048 3.641 -3.656 -3.093 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 6 1_555 A 5CM 2 1_555 B DG 5 1_555 -0.433 -1.597 3.031 0.554 4.336 35.698 -3.141 0.772 2.817 7.040 -0.899 35.956 1 AA_DG15CM2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A 5CM 2 1_555 B DG 5 1_555 A DG 3 1_555 B DC 4 1_555 0.653 -1.787 3.406 2.316 11.610 24.335 -6.575 -0.850 2.371 25.688 -5.124 27.023 2 AA_5CM2DG3:DC10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DG 3 1_555 B DC 4 1_555 A DC 4 1_555 B DG 3 1_555 0.218 -1.818 3.282 -1.336 11.941 33.904 -4.507 -0.527 2.509 19.723 2.207 35.911 3 AA_DG3DC4:DG9DC10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DC 4 1_555 B DG 3 1_555 A DG 5 1_555 B 5CM 2 1_555 -0.726 -2.000 3.169 -0.942 14.855 22.979 -7.186 1.350 1.625 33.191 2.105 27.324 4 AA_DC4DG5:5CM8DG9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DG 5 1_555 B 5CM 2 1_555 A DC 6 1_555 B DG 1 1_555 0.372 -1.357 3.242 1.274 1.747 36.124 -2.427 -0.423 3.186 2.815 -2.053 36.187 5 AA_DG5DC6:DG75CM8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 256D _atom_sites.fract_transf_matrix[1][1] 0.025355 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021815 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025304 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 21.640 13.639 3.109 1.00 29.93 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 22.963 13.949 2.609 1.00 24.06 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 23.119 13.862 1.088 1.00 20.46 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 23.308 12.561 0.502 1.00 19.09 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 21.936 14.476 0.358 1.00 18.87 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 22.054 15.880 0.306 1.00 20.73 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 22.055 13.857 -1.020 1.00 17.37 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 22.506 12.485 -0.698 1.00 16.32 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 21.387 11.532 -0.618 1.00 14.08 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 20.996 10.801 0.456 1.00 12.09 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 19.965 10.033 0.259 1.00 13.49 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 19.631 10.253 -1.059 1.00 10.07 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 18.597 9.676 -1.819 1.00 9.67 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 17.807 8.807 -1.506 1.00 9.01 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 18.566 10.173 -3.079 1.00 7.11 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 19.458 11.040 -3.571 1.00 6.76 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 19.307 11.295 -4.851 1.00 3.23 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 20.458 11.612 -2.901 1.00 8.62 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 20.483 11.171 -1.625 1.00 10.46 ? 1 DG A C4 1 HETATM 20 N N1 . 5CM A 1 2 ? 17.829 14.241 -3.339 1.00 17.52 ? 2 5CM A N1 1 HETATM 21 C C2 . 5CM A 1 2 ? 16.823 13.392 -3.847 1.00 19.32 ? 2 5CM A C2 1 HETATM 22 N N3 . 5CM A 1 2 ? 16.242 12.488 -2.981 1.00 16.12 ? 2 5CM A N3 1 HETATM 23 C C4 . 5CM A 1 2 ? 16.626 12.453 -1.683 1.00 15.16 ? 2 5CM A C4 1 HETATM 24 C C5 . 5CM A 1 2 ? 17.597 13.371 -1.131 1.00 11.46 ? 2 5CM A C5 1 HETATM 25 C C5A . 5CM A 1 2 ? 17.958 13.348 0.323 1.00 6.62 ? 2 5CM A C5A 1 HETATM 26 C C6 . 5CM A 1 2 ? 18.201 14.219 -1.998 1.00 13.50 ? 2 5CM A C6 1 HETATM 27 O O2 . 5CM A 1 2 ? 16.443 13.450 -5.030 1.00 18.57 ? 2 5CM A O2 1 HETATM 28 N N4 . 5CM A 1 2 ? 16.100 11.486 -0.911 1.00 16.53 ? 2 5CM A N4 1 HETATM 29 C "C1'" . 5CM A 1 2 ? 18.557 15.085 -4.336 1.00 19.83 ? 2 5CM A "C1'" 1 HETATM 30 C "C2'" . 5CM A 1 2 ? 17.942 16.364 -4.751 1.00 22.85 ? 2 5CM A "C2'" 1 HETATM 31 C "C3'" . 5CM A 1 2 ? 18.490 17.268 -3.661 1.00 24.06 ? 2 5CM A "C3'" 1 HETATM 32 C "C4'" . 5CM A 1 2 ? 19.942 16.843 -3.653 1.00 20.99 ? 2 5CM A "C4'" 1 HETATM 33 O "O4'" . 5CM A 1 2 ? 19.878 15.452 -3.918 1.00 20.62 ? 2 5CM A "O4'" 1 HETATM 34 O "O3'" . 5CM A 1 2 ? 18.343 18.648 -3.904 1.00 29.92 ? 2 5CM A "O3'" 1 HETATM 35 C "C5'" . 5CM A 1 2 ? 20.735 17.216 -2.396 1.00 19.33 ? 2 5CM A "C5'" 1 HETATM 36 O "O5'" . 5CM A 1 2 ? 20.114 16.732 -1.212 1.00 19.59 ? 2 5CM A "O5'" 1 HETATM 37 P P . 5CM A 1 2 ? 20.805 16.925 0.231 1.00 23.37 ? 2 5CM A P 1 HETATM 38 O OP1 . 5CM A 1 2 ? 21.422 18.251 0.165 1.00 22.67 ? 2 5CM A OP1 1 HETATM 39 O OP2 . 5CM A 1 2 ? 19.806 16.637 1.326 1.00 18.57 ? 2 5CM A OP2 1 ATOM 40 P P . DG A 1 3 ? 17.176 19.528 -3.181 1.00 34.76 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? 17.440 20.935 -3.598 1.00 35.83 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? 17.010 19.147 -1.755 1.00 35.17 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? 15.936 19.030 -4.024 1.00 33.13 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? 14.664 18.901 -3.453 1.00 31.39 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? 13.860 18.064 -4.412 1.00 29.16 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? 14.465 16.770 -4.536 1.00 28.37 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? 12.418 17.885 -3.994 1.00 28.21 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? 11.751 19.051 -4.408 1.00 28.07 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? 12.084 16.615 -4.740 1.00 26.66 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? 13.369 15.858 -4.562 1.00 22.39 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? 13.411 15.102 -3.279 1.00 19.20 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? 14.225 15.289 -2.162 1.00 15.97 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? 13.981 14.403 -1.196 1.00 14.94 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? 12.967 13.550 -1.741 1.00 11.90 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? 12.241 12.409 -1.232 1.00 11.37 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? 12.335 11.790 -0.201 1.00 9.87 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? 11.298 11.943 -2.086 1.00 10.04 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? 11.044 12.460 -3.265 1.00 5.89 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? 10.083 11.973 -3.925 1.00 5.49 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? 11.684 13.437 -3.784 1.00 9.14 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? 12.630 13.969 -2.989 1.00 12.70 ? 3 DG A C4 1 ATOM 62 P P . DC A 1 4 ? 10.637 19.623 -3.459 1.00 27.02 ? 4 DC A P 1 ATOM 63 O OP1 . DC A 1 4 ? 10.199 20.923 -4.033 1.00 25.88 ? 4 DC A OP1 1 ATOM 64 O OP2 . DC A 1 4 ? 11.073 19.516 -2.045 1.00 29.08 ? 4 DC A OP2 1 ATOM 65 O "O5'" . DC A 1 4 ? 9.540 18.530 -3.663 1.00 24.31 ? 4 DC A "O5'" 1 ATOM 66 C "C5'" . DC A 1 4 ? 8.630 18.493 -4.745 1.00 23.03 ? 4 DC A "C5'" 1 ATOM 67 C "C4'" . DC A 1 4 ? 7.677 17.382 -4.392 1.00 22.88 ? 4 DC A "C4'" 1 ATOM 68 O "O4'" . DC A 1 4 ? 8.413 16.137 -4.160 1.00 22.58 ? 4 DC A "O4'" 1 ATOM 69 C "C3'" . DC A 1 4 ? 6.980 17.626 -3.074 1.00 21.97 ? 4 DC A "C3'" 1 ATOM 70 O "O3'" . DC A 1 4 ? 5.916 18.563 -3.200 1.00 23.99 ? 4 DC A "O3'" 1 ATOM 71 C "C2'" . DC A 1 4 ? 6.528 16.216 -2.784 1.00 19.41 ? 4 DC A "C2'" 1 ATOM 72 C "C1'" . DC A 1 4 ? 7.714 15.392 -3.145 1.00 16.50 ? 4 DC A "C1'" 1 ATOM 73 N N1 . DC A 1 4 ? 8.528 15.017 -1.991 1.00 14.68 ? 4 DC A N1 1 ATOM 74 C C2 . DC A 1 4 ? 8.114 13.927 -1.229 1.00 13.20 ? 4 DC A C2 1 ATOM 75 O O2 . DC A 1 4 ? 7.045 13.365 -1.456 1.00 11.81 ? 4 DC A O2 1 ATOM 76 N N3 . DC A 1 4 ? 8.893 13.532 -0.167 1.00 8.87 ? 4 DC A N3 1 ATOM 77 C C4 . DC A 1 4 ? 9.967 14.243 0.153 1.00 9.12 ? 4 DC A C4 1 ATOM 78 N N4 . DC A 1 4 ? 10.624 13.930 1.259 1.00 10.50 ? 4 DC A N4 1 ATOM 79 C C5 . DC A 1 4 ? 10.389 15.353 -0.606 1.00 11.52 ? 4 DC A C5 1 ATOM 80 C C6 . DC A 1 4 ? 9.650 15.712 -1.687 1.00 14.82 ? 4 DC A C6 1 ATOM 81 P P . DG A 1 5 ? 5.296 19.191 -1.854 1.00 29.01 ? 5 DG A P 1 ATOM 82 O OP1 . DG A 1 5 ? 4.348 20.219 -2.329 1.00 31.40 ? 5 DG A OP1 1 ATOM 83 O OP2 . DG A 1 5 ? 6.380 19.543 -0.902 1.00 25.83 ? 5 DG A OP2 1 ATOM 84 O "O5'" . DG A 1 5 ? 4.363 18.093 -1.112 1.00 26.13 ? 5 DG A "O5'" 1 ATOM 85 C "C5'" . DG A 1 5 ? 3.091 17.656 -1.615 1.00 19.39 ? 5 DG A "C5'" 1 ATOM 86 C "C4'" . DG A 1 5 ? 2.638 16.472 -0.752 1.00 14.34 ? 5 DG A "C4'" 1 ATOM 87 O "O4'" . DG A 1 5 ? 3.740 15.565 -0.679 1.00 15.27 ? 5 DG A "O4'" 1 ATOM 88 C "C3'" . DG A 1 5 ? 2.399 16.744 0.710 1.00 11.98 ? 5 DG A "C3'" 1 ATOM 89 O "O3'" . DG A 1 5 ? 1.160 17.367 1.002 1.00 11.26 ? 5 DG A "O3'" 1 ATOM 90 C "C2'" . DG A 1 5 ? 2.438 15.375 1.260 1.00 9.65 ? 5 DG A "C2'" 1 ATOM 91 C "C1'" . DG A 1 5 ? 3.559 14.768 0.489 1.00 9.90 ? 5 DG A "C1'" 1 ATOM 92 N N9 . DG A 1 5 ? 4.765 14.716 1.295 1.00 4.99 ? 5 DG A N9 1 ATOM 93 C C8 . DG A 1 5 ? 5.843 15.532 1.286 1.00 6.64 ? 5 DG A C8 1 ATOM 94 N N7 . DG A 1 5 ? 6.758 15.246 2.189 1.00 5.18 ? 5 DG A N7 1 ATOM 95 C C5 . DG A 1 5 ? 6.231 14.095 2.817 1.00 6.41 ? 5 DG A C5 1 ATOM 96 C C6 . DG A 1 5 ? 6.743 13.261 3.877 1.00 8.57 ? 5 DG A C6 1 ATOM 97 O O6 . DG A 1 5 ? 7.849 13.208 4.390 1.00 10.08 ? 5 DG A O6 1 ATOM 98 N N1 . DG A 1 5 ? 5.847 12.297 4.301 1.00 7.78 ? 5 DG A N1 1 ATOM 99 C C2 . DG A 1 5 ? 4.629 12.155 3.807 1.00 4.77 ? 5 DG A C2 1 ATOM 100 N N2 . DG A 1 5 ? 3.851 11.358 4.431 1.00 7.49 ? 5 DG A N2 1 ATOM 101 N N3 . DG A 1 5 ? 4.160 12.798 2.760 1.00 2.72 ? 5 DG A N3 1 ATOM 102 C C4 . DG A 1 5 ? 4.996 13.791 2.303 1.00 5.81 ? 5 DG A C4 1 ATOM 103 P P . DC A 1 6 ? 1.099 18.479 2.215 1.00 14.37 ? 6 DC A P 1 ATOM 104 O OP1 . DC A 1 6 ? -0.122 19.305 2.029 1.00 12.04 ? 6 DC A OP1 1 ATOM 105 O OP2 . DC A 1 6 ? 2.440 19.119 2.372 1.00 9.52 ? 6 DC A OP2 1 ATOM 106 O "O5'" . DC A 1 6 ? 0.825 17.537 3.494 1.00 13.67 ? 6 DC A "O5'" 1 ATOM 107 C "C5'" . DC A 1 6 ? -0.333 16.700 3.545 1.00 12.27 ? 6 DC A "C5'" 1 ATOM 108 C "C4'" . DC A 1 6 ? -0.034 15.681 4.593 1.00 11.61 ? 6 DC A "C4'" 1 ATOM 109 O "O4'" . DC A 1 6 ? 1.172 15.012 4.233 1.00 13.10 ? 6 DC A "O4'" 1 ATOM 110 C "C3'" . DC A 1 6 ? 0.296 16.304 5.948 1.00 12.46 ? 6 DC A "C3'" 1 ATOM 111 O "O3'" . DC A 1 6 ? -0.748 16.873 6.749 1.00 16.40 ? 6 DC A "O3'" 1 ATOM 112 C "C2'" . DC A 1 6 ? 0.926 15.131 6.564 1.00 10.46 ? 6 DC A "C2'" 1 ATOM 113 C "C1'" . DC A 1 6 ? 1.788 14.619 5.448 1.00 8.81 ? 6 DC A "C1'" 1 ATOM 114 N N1 . DC A 1 6 ? 3.164 15.071 5.560 1.00 9.33 ? 6 DC A N1 1 ATOM 115 C C2 . DC A 1 6 ? 3.959 14.349 6.445 1.00 9.76 ? 6 DC A C2 1 ATOM 116 O O2 . DC A 1 6 ? 3.561 13.378 7.134 1.00 8.97 ? 6 DC A O2 1 ATOM 117 N N3 . DC A 1 6 ? 5.255 14.755 6.534 1.00 7.58 ? 6 DC A N3 1 ATOM 118 C C4 . DC A 1 6 ? 5.743 15.712 5.792 1.00 8.76 ? 6 DC A C4 1 ATOM 119 N N4 . DC A 1 6 ? 7.043 15.947 5.918 1.00 11.05 ? 6 DC A N4 1 ATOM 120 C C5 . DC A 1 6 ? 4.933 16.469 4.921 1.00 6.62 ? 6 DC A C5 1 ATOM 121 C C6 . DC A 1 6 ? 3.640 16.117 4.823 1.00 8.48 ? 6 DC A C6 1 ATOM 122 O "O5'" . DG B 1 1 ? 12.681 9.025 11.660 1.00 29.63 ? 7 DG B "O5'" 1 ATOM 123 C "C5'" . DG B 1 1 ? 12.184 8.608 12.941 1.00 24.51 ? 7 DG B "C5'" 1 ATOM 124 C "C4'" . DG B 1 1 ? 10.675 8.797 13.107 1.00 21.60 ? 7 DG B "C4'" 1 ATOM 125 O "O4'" . DG B 1 1 ? 10.198 10.137 13.199 1.00 20.62 ? 7 DG B "O4'" 1 ATOM 126 C "C3'" . DG B 1 1 ? 9.891 8.224 11.946 1.00 21.40 ? 7 DG B "C3'" 1 ATOM 127 O "O3'" . DG B 1 1 ? 9.753 6.817 12.076 1.00 25.86 ? 7 DG B "O3'" 1 ATOM 128 C "C2'" . DG B 1 1 ? 8.540 8.927 12.043 1.00 18.82 ? 7 DG B "C2'" 1 ATOM 129 C "C1'" . DG B 1 1 ? 8.961 10.257 12.483 1.00 17.57 ? 7 DG B "C1'" 1 ATOM 130 N N9 . DG B 1 1 ? 9.133 11.206 11.405 1.00 17.46 ? 7 DG B N9 1 ATOM 131 C C8 . DG B 1 1 ? 10.266 11.884 11.061 1.00 16.75 ? 7 DG B C8 1 ATOM 132 N N7 . DG B 1 1 ? 10.125 12.771 10.123 1.00 17.30 ? 7 DG B N7 1 ATOM 133 C C5 . DG B 1 1 ? 8.772 12.656 9.776 1.00 16.94 ? 7 DG B C5 1 ATOM 134 C C6 . DG B 1 1 ? 8.012 13.347 8.786 1.00 16.56 ? 7 DG B C6 1 ATOM 135 O O6 . DG B 1 1 ? 8.346 14.243 8.020 1.00 20.98 ? 7 DG B O6 1 ATOM 136 N N1 . DG B 1 1 ? 6.717 12.924 8.735 1.00 13.82 ? 7 DG B N1 1 ATOM 137 C C2 . DG B 1 1 ? 6.180 12.008 9.557 1.00 12.73 ? 7 DG B C2 1 ATOM 138 N N2 . DG B 1 1 ? 4.898 11.837 9.450 1.00 5.34 ? 7 DG B N2 1 ATOM 139 N N3 . DG B 1 1 ? 6.836 11.325 10.497 1.00 17.19 ? 7 DG B N3 1 ATOM 140 C C4 . DG B 1 1 ? 8.149 11.699 10.551 1.00 16.87 ? 7 DG B C4 1 HETATM 141 N N1 . 5CM B 1 2 ? 6.599 8.810 7.928 1.00 17.63 ? 8 5CM B N1 1 HETATM 142 C C2 . 5CM B 1 2 ? 6.172 9.701 6.961 1.00 18.72 ? 8 5CM B C2 1 HETATM 143 N N3 . 5CM B 1 2 ? 7.059 10.502 6.320 1.00 15.93 ? 8 5CM B N3 1 HETATM 144 C C4 . 5CM B 1 2 ? 8.348 10.410 6.664 1.00 17.83 ? 8 5CM B C4 1 HETATM 145 C C5 . 5CM B 1 2 ? 8.846 9.443 7.617 1.00 13.97 ? 8 5CM B C5 1 HETATM 146 C C5A . 5CM B 1 2 ? 10.333 9.306 7.910 1.00 13.33 ? 8 5CM B C5A 1 HETATM 147 C C6 . 5CM B 1 2 ? 7.929 8.703 8.267 1.00 14.60 ? 8 5CM B C6 1 HETATM 148 O O2 . 5CM B 1 2 ? 4.990 9.731 6.623 1.00 18.15 ? 8 5CM B O2 1 HETATM 149 N N4 . 5CM B 1 2 ? 9.174 11.288 6.070 1.00 22.08 ? 8 5CM B N4 1 HETATM 150 C "C1'" . 5CM B 1 2 ? 5.518 8.001 8.611 1.00 21.61 ? 8 5CM B "C1'" 1 HETATM 151 C "C2'" . 5CM B 1 2 ? 4.929 6.803 7.942 1.00 23.39 ? 8 5CM B "C2'" 1 HETATM 152 C "C3'" . 5CM B 1 2 ? 5.800 5.718 8.511 1.00 26.32 ? 8 5CM B "C3'" 1 HETATM 153 C "C4'" . 5CM B 1 2 ? 5.790 6.108 9.969 1.00 24.88 ? 8 5CM B "C4'" 1 HETATM 154 O "O4'" . 5CM B 1 2 ? 5.826 7.526 9.924 1.00 23.80 ? 8 5CM B "O4'" 1 HETATM 155 O "O3'" . 5CM B 1 2 ? 5.347 4.387 8.240 1.00 29.66 ? 8 5CM B "O3'" 1 HETATM 156 C "C5'" . 5CM B 1 2 ? 6.973 5.635 10.767 1.00 22.19 ? 8 5CM B "C5'" 1 HETATM 157 O "O5'" . 5CM B 1 2 ? 8.144 6.103 10.123 1.00 22.12 ? 8 5CM B "O5'" 1 HETATM 158 P P . 5CM B 1 2 ? 9.590 5.897 10.777 1.00 25.60 ? 8 5CM B P 1 HETATM 159 O OP1 . 5CM B 1 2 ? 9.599 4.537 11.324 1.00 29.17 ? 8 5CM B OP1 1 HETATM 160 O OP2 . 5CM B 1 2 ? 10.626 6.297 9.781 1.00 28.63 ? 8 5CM B OP2 1 ATOM 161 P P . DG B 1 3 ? 6.178 3.524 7.120 1.00 31.27 ? 9 DG B P 1 ATOM 162 O OP1 . DG B 1 3 ? 5.616 2.147 7.155 1.00 33.79 ? 9 DG B OP1 1 ATOM 163 O OP2 . DG B 1 3 ? 7.634 3.743 7.222 1.00 30.34 ? 9 DG B OP2 1 ATOM 164 O "O5'" . DG B 1 3 ? 5.647 4.241 5.818 1.00 27.64 ? 9 DG B "O5'" 1 ATOM 165 C "C5'" . DG B 1 3 ? 6.339 4.262 4.602 1.00 21.78 ? 9 DG B "C5'" 1 ATOM 166 C "C4'" . DG B 1 3 ? 5.425 5.109 3.738 1.00 19.78 ? 9 DG B "C4'" 1 ATOM 167 O "O4'" . DG B 1 3 ? 5.245 6.401 4.373 1.00 17.33 ? 9 DG B "O4'" 1 ATOM 168 C "C3'" . DG B 1 3 ? 5.940 5.295 2.327 1.00 17.92 ? 9 DG B "C3'" 1 ATOM 169 O "O3'" . DG B 1 3 ? 5.608 4.160 1.570 1.00 19.83 ? 9 DG B "O3'" 1 ATOM 170 C "C2'" . DG B 1 3 ? 5.220 6.549 1.952 1.00 15.60 ? 9 DG B "C2'" 1 ATOM 171 C "C1'" . DG B 1 3 ? 5.338 7.294 3.274 1.00 14.30 ? 9 DG B "C1'" 1 ATOM 172 N N9 . DG B 1 3 ? 6.661 7.968 3.417 1.00 12.89 ? 9 DG B N9 1 ATOM 173 C C8 . DG B 1 3 ? 7.696 7.749 4.297 1.00 13.05 ? 9 DG B C8 1 ATOM 174 N N7 . DG B 1 3 ? 8.669 8.636 4.175 1.00 10.97 ? 9 DG B N7 1 ATOM 175 C C5 . DG B 1 3 ? 8.202 9.497 3.159 1.00 10.43 ? 9 DG B C5 1 ATOM 176 C C6 . DG B 1 3 ? 8.744 10.654 2.532 1.00 11.40 ? 9 DG B C6 1 ATOM 177 O O6 . DG B 1 3 ? 9.778 11.257 2.738 1.00 15.03 ? 9 DG B O6 1 ATOM 178 N N1 . DG B 1 3 ? 7.957 11.136 1.547 1.00 14.15 ? 9 DG B N1 1 ATOM 179 C C2 . DG B 1 3 ? 6.801 10.611 1.138 1.00 11.64 ? 9 DG B C2 1 ATOM 180 N N2 . DG B 1 3 ? 6.151 11.137 0.150 1.00 11.46 ? 9 DG B N2 1 ATOM 181 N N3 . DG B 1 3 ? 6.269 9.589 1.697 1.00 9.83 ? 9 DG B N3 1 ATOM 182 C C4 . DG B 1 3 ? 7.012 9.072 2.696 1.00 8.71 ? 9 DG B C4 1 ATOM 183 P P . DC B 1 4 ? 6.676 3.435 0.680 1.00 20.15 ? 10 DC B P 1 ATOM 184 O OP1 . DC B 1 4 ? 6.112 2.129 0.330 1.00 21.56 ? 10 DC B OP1 1 ATOM 185 O OP2 . DC B 1 4 ? 8.014 3.576 1.293 1.00 20.27 ? 10 DC B OP2 1 ATOM 186 O "O5'" . DC B 1 4 ? 6.700 4.260 -0.646 1.00 19.07 ? 10 DC B "O5'" 1 ATOM 187 C "C5'" . DC B 1 4 ? 5.501 4.466 -1.392 1.00 19.54 ? 10 DC B "C5'" 1 ATOM 188 C "C4'" . DC B 1 4 ? 5.718 5.710 -2.225 1.00 20.38 ? 10 DC B "C4'" 1 ATOM 189 O "O4'" . DC B 1 4 ? 5.944 6.919 -1.438 1.00 19.06 ? 10 DC B "O4'" 1 ATOM 190 C "C3'" . DC B 1 4 ? 7.001 5.577 -3.013 1.00 19.35 ? 10 DC B "C3'" 1 ATOM 191 O "O3'" . DC B 1 4 ? 6.812 4.696 -4.072 1.00 22.40 ? 10 DC B "O3'" 1 ATOM 192 C "C2'" . DC B 1 4 ? 7.157 6.941 -3.470 1.00 16.13 ? 10 DC B "C2'" 1 ATOM 193 C "C1'" . DC B 1 4 ? 6.895 7.662 -2.214 1.00 15.44 ? 10 DC B "C1'" 1 ATOM 194 N N1 . DC B 1 4 ? 8.102 7.968 -1.503 1.00 13.91 ? 10 DC B N1 1 ATOM 195 C C2 . DC B 1 4 ? 8.783 9.114 -1.914 1.00 15.05 ? 10 DC B C2 1 ATOM 196 O O2 . DC B 1 4 ? 8.546 9.711 -2.971 1.00 11.34 ? 10 DC B O2 1 ATOM 197 N N3 . DC B 1 4 ? 9.813 9.534 -1.102 1.00 14.86 ? 10 DC B N3 1 ATOM 198 C C4 . DC B 1 4 ? 10.178 8.822 -0.035 1.00 12.96 ? 10 DC B C4 1 ATOM 199 N N4 . DC B 1 4 ? 11.167 9.313 0.705 1.00 14.00 ? 10 DC B N4 1 ATOM 200 C C5 . DC B 1 4 ? 9.538 7.616 0.313 1.00 13.09 ? 10 DC B C5 1 ATOM 201 C C6 . DC B 1 4 ? 8.474 7.221 -0.431 1.00 15.17 ? 10 DC B C6 1 ATOM 202 P P . DG B 1 5 ? 8.098 3.973 -4.602 1.00 25.13 ? 11 DG B P 1 ATOM 203 O OP1 . DG B 1 5 ? 7.549 2.892 -5.448 1.00 25.12 ? 11 DG B OP1 1 ATOM 204 O OP2 . DG B 1 5 ? 8.992 3.688 -3.445 1.00 23.33 ? 11 DG B OP2 1 ATOM 205 O "O5'" . DG B 1 5 ? 8.893 4.948 -5.595 1.00 21.89 ? 11 DG B "O5'" 1 ATOM 206 C "C5'" . DG B 1 5 ? 8.287 5.419 -6.818 1.00 18.17 ? 11 DG B "C5'" 1 ATOM 207 C "C4'" . DG B 1 5 ? 9.120 6.608 -7.285 1.00 12.09 ? 11 DG B "C4'" 1 ATOM 208 O "O4'" . DG B 1 5 ? 9.190 7.566 -6.219 1.00 9.47 ? 11 DG B "O4'" 1 ATOM 209 C "C3'" . DG B 1 5 ? 10.581 6.324 -7.527 1.00 9.39 ? 11 DG B "C3'" 1 ATOM 210 O "O3'" . DG B 1 5 ? 10.916 5.635 -8.705 1.00 9.92 ? 11 DG B "O3'" 1 ATOM 211 C "C2'" . DG B 1 5 ? 11.113 7.698 -7.550 1.00 6.63 ? 11 DG B "C2'" 1 ATOM 212 C "C1'" . DG B 1 5 ? 10.378 8.272 -6.412 1.00 6.79 ? 11 DG B "C1'" 1 ATOM 213 N N9 . DG B 1 5 ? 11.121 8.233 -5.196 1.00 5.00 ? 11 DG B N9 1 ATOM 214 C C8 . DG B 1 5 ? 11.014 7.438 -4.122 1.00 7.78 ? 11 DG B C8 1 ATOM 215 N N7 . DG B 1 5 ? 11.868 7.711 -3.158 1.00 8.33 ? 11 DG B N7 1 ATOM 216 C C5 . DG B 1 5 ? 12.586 8.807 -3.638 1.00 7.30 ? 11 DG B C5 1 ATOM 217 C C6 . DG B 1 5 ? 13.667 9.583 -3.048 1.00 10.94 ? 11 DG B C6 1 ATOM 218 O O6 . DG B 1 5 ? 14.206 9.518 -1.941 1.00 12.80 ? 11 DG B O6 1 ATOM 219 N N1 . DG B 1 5 ? 14.128 10.571 -3.906 1.00 14.10 ? 11 DG B N1 1 ATOM 220 C C2 . DG B 1 5 ? 13.661 10.783 -5.162 1.00 12.78 ? 11 DG B C2 1 ATOM 221 N N2 . DG B 1 5 ? 14.260 11.670 -5.879 1.00 14.81 ? 11 DG B N2 1 ATOM 222 N N3 . DG B 1 5 ? 12.639 10.139 -5.716 1.00 10.81 ? 11 DG B N3 1 ATOM 223 C C4 . DG B 1 5 ? 12.147 9.124 -4.900 1.00 9.61 ? 11 DG B C4 1 ATOM 224 P P . DC B 1 6 ? 12.170 4.571 -8.728 1.00 12.59 ? 12 DC B P 1 ATOM 225 O OP1 . DC B 1 6 ? 12.002 3.774 -9.951 1.00 13.75 ? 12 DC B OP1 1 ATOM 226 O OP2 . DC B 1 6 ? 12.407 3.891 -7.427 1.00 13.47 ? 12 DC B OP2 1 ATOM 227 O "O5'" . DC B 1 6 ? 13.387 5.575 -8.962 1.00 12.73 ? 12 DC B "O5'" 1 ATOM 228 C "C5'" . DC B 1 6 ? 13.587 6.285 -10.206 1.00 10.01 ? 12 DC B "C5'" 1 ATOM 229 C "C4'" . DC B 1 6 ? 14.648 7.280 -9.948 1.00 5.39 ? 12 DC B "C4'" 1 ATOM 230 O "O4'" . DC B 1 6 ? 14.260 7.968 -8.743 1.00 5.60 ? 12 DC B "O4'" 1 ATOM 231 C "C3'" . DC B 1 6 ? 15.952 6.699 -9.621 1.00 4.82 ? 12 DC B "C3'" 1 ATOM 232 O "O3'" . DC B 1 6 ? 16.668 6.281 -10.745 1.00 5.67 ? 12 DC B "O3'" 1 ATOM 233 C "C2'" . DC B 1 6 ? 16.579 7.834 -8.896 1.00 5.57 ? 12 DC B "C2'" 1 ATOM 234 C "C1'" . DC B 1 6 ? 15.445 8.369 -8.032 1.00 6.05 ? 12 DC B "C1'" 1 ATOM 235 N N1 . DC B 1 6 ? 15.521 7.920 -6.612 1.00 5.84 ? 12 DC B N1 1 ATOM 236 C C2 . DC B 1 6 ? 16.402 8.606 -5.788 1.00 6.45 ? 12 DC B C2 1 ATOM 237 O O2 . DC B 1 6 ? 17.135 9.522 -6.222 1.00 6.34 ? 12 DC B O2 1 ATOM 238 N N3 . DC B 1 6 ? 16.426 8.231 -4.466 1.00 5.61 ? 12 DC B N3 1 ATOM 239 C C4 . DC B 1 6 ? 15.657 7.239 -3.992 1.00 5.28 ? 12 DC B C4 1 ATOM 240 N N4 . DC B 1 6 ? 15.723 6.932 -2.694 1.00 6.71 ? 12 DC B N4 1 ATOM 241 C C5 . DC B 1 6 ? 14.788 6.548 -4.836 1.00 4.65 ? 12 DC B C5 1 ATOM 242 C C6 . DC B 1 6 ? 14.747 6.902 -6.132 1.00 6.28 ? 12 DC B C6 1 HETATM 243 O O . HOH C 2 . ? 8.279 18.145 1.054 1.00 57.75 ? 14 HOH A O 1 HETATM 244 O O . HOH C 2 . ? 15.507 15.010 -7.375 1.00 42.93 ? 15 HOH A O 1 HETATM 245 O O . HOH C 2 . ? 5.749 11.599 -3.829 1.00 18.64 ? 16 HOH A O 1 HETATM 246 O O . HOH C 2 . ? 17.043 12.552 -7.609 1.00 51.94 ? 20 HOH A O 1 HETATM 247 O O . HOH C 2 . ? -1.164 17.098 -0.053 1.00 39.45 ? 22 HOH A O 1 HETATM 248 O O . HOH C 2 . ? 13.593 11.807 2.221 1.00 48.70 ? 23 HOH A O 1 HETATM 249 O O . HOH C 2 . ? -2.809 19.415 -0.090 1.00 21.46 ? 26 HOH A O 1 HETATM 250 O O . HOH C 2 . ? 5.228 18.970 3.315 1.00 30.51 ? 27 HOH A O 1 HETATM 251 O O . HOH C 2 . ? 7.783 22.852 -1.431 1.00 37.33 ? 30 HOH A O 1 HETATM 252 O O . HOH C 2 . ? 11.722 22.247 -5.835 1.00 72.95 ? 31 HOH A O 1 HETATM 253 O O . HOH C 2 . ? 21.404 13.802 -6.138 1.00 43.15 ? 32 HOH A O 1 HETATM 254 O O . HOH C 2 . ? -1.823 19.306 6.307 1.00 30.00 ? 33 HOH A O 1 HETATM 255 O O . HOH C 2 . ? 3.763 14.038 -3.320 1.00 42.74 ? 36 HOH A O 1 HETATM 256 O O . HOH C 2 . ? 3.762 14.945 -6.768 1.00 50.98 ? 37 HOH A O 1 HETATM 257 O O . HOH C 2 . ? 18.903 15.657 4.116 1.00 69.18 ? 39 HOH A O 1 HETATM 258 O O . HOH C 2 . ? -0.564 15.134 -2.205 1.00 60.81 ? 40 HOH A O 1 HETATM 259 O O . HOH C 2 . ? -1.375 22.271 2.385 1.00 62.94 ? 41 HOH A O 1 HETATM 260 O O . HOH C 2 . ? 15.330 9.622 1.996 1.00 42.76 ? 43 HOH A O 1 HETATM 261 O O . HOH C 2 . ? 17.381 8.123 0.774 1.00 52.68 ? 44 HOH A O 1 HETATM 262 O O . HOH C 2 . ? 1.872 11.794 8.756 1.00 66.98 ? 46 HOH A O 1 HETATM 263 O O . HOH D 2 . ? 6.059 -0.241 2.296 1.00 18.62 ? 13 HOH B O 1 HETATM 264 O O . HOH D 2 . ? 11.575 8.023 4.965 1.00 33.74 ? 17 HOH B O 1 HETATM 265 O O . HOH D 2 . ? 14.859 3.337 -12.754 1.00 43.89 ? 18 HOH B O 1 HETATM 266 O O . HOH D 2 . ? 12.598 3.904 -4.740 1.00 39.29 ? 19 HOH B O 1 HETATM 267 O O . HOH D 2 . ? 14.154 4.388 -2.267 1.00 37.81 ? 21 HOH B O 1 HETATM 268 O O . HOH D 2 . ? 8.924 -0.297 1.367 1.00 25.05 ? 24 HOH B O 1 HETATM 269 O O . HOH D 2 . ? 10.150 4.367 3.181 1.00 14.79 ? 25 HOH B O 1 HETATM 270 O O . HOH D 2 . ? 2.946 4.192 6.239 1.00 50.99 ? 28 HOH B O 1 HETATM 271 O O . HOH D 2 . ? 11.434 4.764 -1.106 1.00 44.22 ? 29 HOH B O 1 HETATM 272 O O . HOH D 2 . ? 7.933 2.353 11.995 1.00 26.41 ? 34 HOH B O 1 HETATM 273 O O . HOH D 2 . ? 10.041 4.253 -13.135 1.00 58.11 ? 35 HOH B O 1 HETATM 274 O O . HOH D 2 . ? 4.651 0.101 4.502 1.00 40.42 ? 38 HOH B O 1 HETATM 275 O O . HOH D 2 . ? 6.091 1.975 -7.547 1.00 46.26 ? 42 HOH B O 1 HETATM 276 O O . HOH D 2 . ? 12.034 6.557 2.750 1.00 53.98 ? 45 HOH B O 1 HETATM 277 O O . HOH D 2 . ? 3.995 3.086 -6.006 1.00 71.36 ? 47 HOH B O 1 #