data_276D # _entry.id 276D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 276D pdb_0000276d 10.2210/pdb276d/pdb RCSB DDF066 ? ? WWPDB D_1000177688 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-09-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 276D _pdbx_database_status.recvd_initial_deposition_date 1996-07-22 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Priebe, W.' 2 'Wang, A.H.-J.' 3 # _citation.id primary _citation.title ;Substitutions at C2' of daunosamine in the anticancer drug daunorubicin alter its DNA-binding sequence specificity. ; _citation.journal_abbrev Eur.J.Biochem. _citation.journal_volume 240 _citation.page_first 331 _citation.page_last 335 _citation.year 1996 _citation.journal_id_ASTM EJBCAI _citation.country IX _citation.journal_id_ISSN 0014-2956 _citation.journal_id_CSD 0262 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8841395 _citation.pdbx_database_id_DOI 10.1111/j.1432-1033.1996.0331h.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Priebe, W.' 2 ? primary 'Wang, A.H.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') ; 1809.217 1 ? ? ? ? 2 non-polymer syn "2'-BROMO-4'-EPIDAUNORUBICIN" 606.416 1 ? ? ? ;2'-BROMO-4'-EPIDAUNORUBICIN IS A DAUNORUBICIN DERIVATIVE WHICH HAS ALPHA-MANNO CONFIGURATION. IT HAS SIMILAR ACTIVITY TO DAUNORUBICIN AND EXHIBITS PROMISING ACTIVITY TOWARD MULTIDRUG RESISTANT CELLS. ; 3 water nat water 18.015 45 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGATCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-BROMO-4'-EPIDAUNORUBICIN" DM8 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM8 non-polymer . "2'-BROMO-4'-EPIDAUNORUBICIN" 'WP401; DAUNOMYCIN DERIVATIVE; DAUNORUBICIN DERIVATIVE' 'C27 H28 Br N O10' 606.416 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM8 1 7 7 DM8 DM8 A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . C 3 HOH 9 16 16 HOH HOH A . C 3 HOH 10 17 17 HOH HOH A . C 3 HOH 11 18 18 HOH HOH A . C 3 HOH 12 19 19 HOH HOH A . C 3 HOH 13 20 20 HOH HOH A . C 3 HOH 14 21 21 HOH HOH A . C 3 HOH 15 22 22 HOH HOH A . C 3 HOH 16 23 23 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . C 3 HOH 21 28 28 HOH HOH A . C 3 HOH 22 29 29 HOH HOH A . C 3 HOH 23 30 30 HOH HOH A . C 3 HOH 24 31 31 HOH HOH A . C 3 HOH 25 32 32 HOH HOH A . C 3 HOH 26 33 33 HOH HOH A . C 3 HOH 27 34 34 HOH HOH A . C 3 HOH 28 35 35 HOH HOH A . C 3 HOH 29 36 36 HOH HOH A . C 3 HOH 30 37 37 HOH HOH A . C 3 HOH 31 38 38 HOH HOH A . C 3 HOH 32 39 39 HOH HOH A . C 3 HOH 33 40 40 HOH HOH A . C 3 HOH 34 41 41 HOH HOH A . C 3 HOH 35 42 42 HOH HOH A . C 3 HOH 36 43 43 HOH HOH A . C 3 HOH 37 44 44 HOH HOH A . C 3 HOH 38 45 45 HOH HOH A . C 3 HOH 39 46 46 HOH HOH A . C 3 HOH 40 47 47 HOH HOH A . C 3 HOH 41 48 48 HOH HOH A . C 3 HOH 42 49 49 HOH HOH A . C 3 HOH 43 50 50 HOH HOH A . C 3 HOH 44 51 51 HOH HOH A . C 3 HOH 45 52 52 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MSC 'data collection' . ? 1 NUCLSQ refinement . ? 2 MSC 'data reduction' . ? 3 # _cell.entry_id 276D _cell.length_a 28.090 _cell.length_b 28.090 _cell.length_c 53.380 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 276D _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 276D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.86 _exptl_crystal.density_Matthews 2.79 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298.00 _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, temperature 298.00K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 BACL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1995-07-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 276D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.000 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 276D _refine.ls_number_reflns_obs 1915 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 204 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 276D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 276D _struct.title ;SUBSTITUTIONS AT C2' OF DAUNOSAMINE IN THE ANTICANCER DAUNORUBICIN ALTER ITS DNA-BINDING SEQUENCE SPECIFICITY ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 276D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 276D _struct_ref.pdbx_db_accession 276D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 276D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 276D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.0900000000 -1.0000000000 0.0000000000 0.0000000000 28.0900000000 0.0000000000 0.0000000000 -1.0000000000 26.6900000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM8 7 ? 11 'BINDING SITE FOR RESIDUE DM8 A 7' 'DRUG BINDING SITE' ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 DC A 1 ? DC A 1 . ? 8_665 ? 2 AC1 11 DG A 2 ? DG A 2 . ? 8_665 ? 3 AC1 11 DA A 3 ? DA A 3 . ? 8_665 ? 4 AC1 11 DT A 4 ? DT A 4 . ? 8_665 ? 5 AC1 11 DC A 5 ? DC A 5 . ? 1_555 ? 6 AC1 11 DG A 6 ? DG A 6 . ? 1_555 ? 7 AC1 11 HOH C . ? HOH A 9 . ? 1_555 ? 8 AC1 11 HOH C . ? HOH A 19 . ? 1_555 ? 9 AC1 11 HOH C . ? HOH A 29 . ? 1_555 ? 10 AC1 11 HOH C . ? HOH A 34 . ? 1_555 ? 11 AC1 11 HOH C . ? HOH A 50 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DA _pdbx_validate_close_contact.auth_seq_id_1 3 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 12 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.660 1.593 0.067 0.010 N 2 1 "O3'" A DA 3 ? ? P A DT 4 ? ? 1.690 1.607 0.083 0.012 Y 3 1 "O3'" A DT 4 ? ? P A DC 5 ? ? 1.704 1.607 0.097 0.012 Y 4 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.679 1.593 0.086 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.95 119.90 4.05 0.50 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.36 121.90 -3.54 0.40 N 3 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 138.57 119.70 18.87 1.20 Y 4 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.58 102.40 -4.82 0.80 N 5 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.82 111.50 3.32 0.50 N 6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.18 128.60 -4.42 0.60 N 7 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DA 3 ? ? 140.14 119.70 20.44 1.20 Y 8 1 "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 103.46 109.40 -5.94 0.80 N 9 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 123.48 118.60 4.88 0.60 N 10 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 126.30 129.30 -3.00 0.50 N 11 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 112.58 117.70 -5.12 0.50 N 12 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 124.81 118.60 6.21 0.60 N 13 1 OP1 A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 147.10 119.60 27.50 1.50 N 14 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 97.08 105.70 -8.62 0.90 N 15 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 122.16 127.20 -5.04 0.60 N 16 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 120.18 115.20 4.98 0.60 N 17 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 115.22 119.90 -4.68 0.60 N 18 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 119.72 108.30 11.42 0.30 N 19 1 OP1 A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 134.67 119.60 15.07 1.50 N 20 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 100.34 104.50 -4.16 0.40 N 21 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.91 128.60 -4.69 0.60 N # _struct_site_keywords.site_id 'DRUG BINDING SITE' _struct_site_keywords.text INTERCALATION # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DM8 C1 C Y N 108 DM8 C2 C Y N 109 DM8 C3 C Y N 110 DM8 C4 C Y N 111 DM8 C5 C N N 112 DM8 C6 C Y N 113 DM8 C7 C N S 114 DM8 C8 C N N 115 DM8 C9 C N S 116 DM8 C10 C N N 117 DM8 C11 C Y N 118 DM8 C12 C N N 119 DM8 C13 C N N 120 DM8 C14 C N N 121 DM8 C15 C Y N 122 DM8 C16 C Y N 123 DM8 C17 C Y N 124 DM8 C18 C Y N 125 DM8 C19 C Y N 126 DM8 C20 C Y N 127 DM8 C21 C N N 128 DM8 O4 O N N 129 DM8 O5 O N N 130 DM8 O6 O N N 131 DM8 O7 O N N 132 DM8 O9 O N N 133 DM8 O11 O N N 134 DM8 O12 O N N 135 DM8 O13 O N N 136 DM8 "C1'" C N R 137 DM8 "C2'" C N R 138 DM8 "C3'" C N R 139 DM8 "C4'" C N R 140 DM8 "C5'" C N S 141 DM8 "C6'" C N N 142 DM8 "O5'" O N N 143 DM8 "O4'" O N N 144 DM8 "N3'" N N N 145 DM8 BR BR N N 146 DM8 H1 H N N 147 DM8 H2 H N N 148 DM8 H3 H N N 149 DM8 H7 H N N 150 DM8 H81 H N N 151 DM8 H82 H N N 152 DM8 H101 H N N 153 DM8 H102 H N N 154 DM8 H141 H N N 155 DM8 H142 H N N 156 DM8 H143 H N N 157 DM8 H211 H N N 158 DM8 H212 H N N 159 DM8 H213 H N N 160 DM8 H6 H N N 161 DM8 H9 H N N 162 DM8 H11 H N N 163 DM8 "H1'" H N N 164 DM8 "H2'" H N N 165 DM8 "H3'" H N N 166 DM8 "H4'" H N N 167 DM8 "H5'" H N N 168 DM8 "H6'1" H N N 169 DM8 "H6'2" H N N 170 DM8 "H6'3" H N N 171 DM8 "HO4'" H N N 172 DM8 "HN'1" H N N 173 DM8 "HN'2" H N N 174 DT OP3 O N N 175 DT P P N N 176 DT OP1 O N N 177 DT OP2 O N N 178 DT "O5'" O N N 179 DT "C5'" C N N 180 DT "C4'" C N R 181 DT "O4'" O N N 182 DT "C3'" C N S 183 DT "O3'" O N N 184 DT "C2'" C N N 185 DT "C1'" C N R 186 DT N1 N N N 187 DT C2 C N N 188 DT O2 O N N 189 DT N3 N N N 190 DT C4 C N N 191 DT O4 O N N 192 DT C5 C N N 193 DT C7 C N N 194 DT C6 C N N 195 DT HOP3 H N N 196 DT HOP2 H N N 197 DT "H5'" H N N 198 DT "H5''" H N N 199 DT "H4'" H N N 200 DT "H3'" H N N 201 DT "HO3'" H N N 202 DT "H2'" H N N 203 DT "H2''" H N N 204 DT "H1'" H N N 205 DT H3 H N N 206 DT H71 H N N 207 DT H72 H N N 208 DT H73 H N N 209 DT H6 H N N 210 HOH O O N N 211 HOH H1 H N N 212 HOH H2 H N N 213 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM8 C1 C2 doub Y N 113 DM8 C1 C15 sing Y N 114 DM8 C1 H1 sing N N 115 DM8 C2 C3 sing Y N 116 DM8 C2 H2 sing N N 117 DM8 C3 C4 doub Y N 118 DM8 C3 H3 sing N N 119 DM8 C4 C16 sing Y N 120 DM8 C4 O4 sing N N 121 DM8 C5 C16 sing N N 122 DM8 C5 C17 sing N N 123 DM8 C5 O5 doub N N 124 DM8 C6 C17 doub Y N 125 DM8 C6 C20 sing Y N 126 DM8 C6 O6 sing N N 127 DM8 C7 C8 sing N N 128 DM8 C7 C20 sing N N 129 DM8 C7 O7 sing N N 130 DM8 C7 H7 sing N N 131 DM8 C8 C9 sing N N 132 DM8 C8 H81 sing N N 133 DM8 C8 H82 sing N N 134 DM8 C9 C10 sing N N 135 DM8 C9 C13 sing N N 136 DM8 C9 O9 sing N N 137 DM8 C10 C19 sing N N 138 DM8 C10 H101 sing N N 139 DM8 C10 H102 sing N N 140 DM8 C11 C18 doub Y N 141 DM8 C11 C19 sing Y N 142 DM8 C11 O11 sing N N 143 DM8 C12 C15 sing N N 144 DM8 C12 C18 sing N N 145 DM8 C12 O12 doub N N 146 DM8 C13 C14 sing N N 147 DM8 C13 O13 doub N N 148 DM8 C14 H141 sing N N 149 DM8 C14 H142 sing N N 150 DM8 C14 H143 sing N N 151 DM8 C15 C16 doub Y N 152 DM8 C17 C18 sing Y N 153 DM8 C19 C20 doub Y N 154 DM8 C21 O4 sing N N 155 DM8 C21 H211 sing N N 156 DM8 C21 H212 sing N N 157 DM8 C21 H213 sing N N 158 DM8 O6 H6 sing N N 159 DM8 O7 "C1'" sing N N 160 DM8 O9 H9 sing N N 161 DM8 O11 H11 sing N N 162 DM8 "C1'" "C2'" sing N N 163 DM8 "C1'" "O5'" sing N N 164 DM8 "C1'" "H1'" sing N N 165 DM8 "C2'" "C3'" sing N N 166 DM8 "C2'" BR sing N N 167 DM8 "C2'" "H2'" sing N N 168 DM8 "C3'" "C4'" sing N N 169 DM8 "C3'" "N3'" sing N N 170 DM8 "C3'" "H3'" sing N N 171 DM8 "C4'" "C5'" sing N N 172 DM8 "C4'" "O4'" sing N N 173 DM8 "C4'" "H4'" sing N N 174 DM8 "C5'" "C6'" sing N N 175 DM8 "C5'" "O5'" sing N N 176 DM8 "C5'" "H5'" sing N N 177 DM8 "C6'" "H6'1" sing N N 178 DM8 "C6'" "H6'2" sing N N 179 DM8 "C6'" "H6'3" sing N N 180 DM8 "O4'" "HO4'" sing N N 181 DM8 "N3'" "HN'1" sing N N 182 DM8 "N3'" "HN'2" sing N N 183 DT OP3 P sing N N 184 DT OP3 HOP3 sing N N 185 DT P OP1 doub N N 186 DT P OP2 sing N N 187 DT P "O5'" sing N N 188 DT OP2 HOP2 sing N N 189 DT "O5'" "C5'" sing N N 190 DT "C5'" "C4'" sing N N 191 DT "C5'" "H5'" sing N N 192 DT "C5'" "H5''" sing N N 193 DT "C4'" "O4'" sing N N 194 DT "C4'" "C3'" sing N N 195 DT "C4'" "H4'" sing N N 196 DT "O4'" "C1'" sing N N 197 DT "C3'" "O3'" sing N N 198 DT "C3'" "C2'" sing N N 199 DT "C3'" "H3'" sing N N 200 DT "O3'" "HO3'" sing N N 201 DT "C2'" "C1'" sing N N 202 DT "C2'" "H2'" sing N N 203 DT "C2'" "H2''" sing N N 204 DT "C1'" N1 sing N N 205 DT "C1'" "H1'" sing N N 206 DT N1 C2 sing N N 207 DT N1 C6 sing N N 208 DT C2 O2 doub N N 209 DT C2 N3 sing N N 210 DT N3 C4 sing N N 211 DT N3 H3 sing N N 212 DT C4 O4 doub N N 213 DT C4 C5 sing N N 214 DT C5 C7 sing N N 215 DT C5 C6 doub N N 216 DT C7 H71 sing N N 217 DT C7 H72 sing N N 218 DT C7 H73 sing N N 219 DT C6 H6 sing N N 220 HOH O H1 sing N N 221 HOH O H2 sing N N 222 # _ndb_struct_conf_na.entry_id 276D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_665 0.219 -0.284 -0.089 5.845 1.810 -1.225 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_665 -0.267 -0.234 -0.191 -14.353 0.961 0.948 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DA 3 1_555 A DT 4 8_665 -0.056 -0.201 0.046 -8.830 -4.510 2.899 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1 1 A DT 4 1_555 A DA 3 8_665 0.056 -0.201 0.046 8.830 -4.510 2.899 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 8_665 0.267 -0.234 -0.191 14.353 0.961 0.948 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_665 -0.219 -0.284 -0.089 -5.845 1.810 -1.225 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.145 0.962 7.010 0.118 -3.300 33.977 2.753 -1.912 6.892 -5.631 -0.202 34.132 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.109 0.319 3.328 -4.917 0.744 32.574 0.431 1.082 3.460 1.317 8.703 32.942 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.454 3.034 0.000 2.104 30.446 -1.249 0.000 2.997 4.001 0.000 30.517 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.109 0.319 3.328 4.917 0.744 32.574 0.431 -1.082 3.460 1.317 -8.703 32.942 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.145 0.962 7.010 -0.118 -3.300 33.977 2.753 1.912 6.892 -5.631 0.202 34.132 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 276D _atom_sites.fract_transf_matrix[1][1] 0.035600 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035600 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018734 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 9.508 20.322 22.856 1.00 24.54 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.927 21.317 23.822 1.00 23.85 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 11.393 21.072 24.158 1.00 23.70 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 11.536 19.966 25.017 1.00 22.87 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 12.295 20.789 22.920 1.00 23.65 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 13.407 21.682 22.957 1.00 24.80 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 12.733 19.351 23.048 1.00 23.05 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 12.570 19.095 24.585 1.00 21.94 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 12.146 17.710 24.766 1.00 20.94 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 13.134 16.735 24.900 1.00 20.14 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.309 17.106 24.905 1.00 20.11 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 12.722 15.452 24.969 1.00 19.73 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 11.432 15.078 24.980 1.00 19.38 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 11.064 13.797 25.065 1.00 19.25 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 10.441 16.078 24.836 1.00 19.94 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.851 17.345 24.718 1.00 20.23 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 13.929 22.954 22.183 1.00 29.87 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 14.786 23.727 23.122 1.00 29.45 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 12.800 23.572 21.425 1.00 29.91 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 15.011 22.230 21.153 1.00 26.14 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 16.047 21.291 21.495 1.00 24.85 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 16.353 20.483 20.272 1.00 24.61 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 15.491 19.339 20.230 1.00 23.92 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 16.185 21.162 18.900 1.00 24.56 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 17.342 20.952 18.110 1.00 26.10 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 14.969 20.483 18.271 1.00 23.72 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 15.196 19.106 18.836 1.00 22.66 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 14.025 18.272 18.714 1.00 21.22 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 12.710 18.629 18.730 1.00 20.89 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 11.927 17.623 18.543 1.00 20.72 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 12.764 16.516 18.441 1.00 20.21 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 12.519 15.123 18.313 1.00 19.82 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 11.373 14.612 18.228 1.00 20.15 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 13.632 14.345 18.324 1.00 19.28 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 14.868 14.842 18.463 1.00 18.99 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 15.859 13.957 18.409 1.00 19.13 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 15.185 16.123 18.612 1.00 19.70 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 14.084 16.907 18.586 1.00 20.34 ? 2 DG A C4 1 ATOM 39 P P . DA A 1 3 ? 18.381 21.780 17.176 1.00 34.00 ? 3 DA A P 1 ATOM 40 O OP1 . DA A 1 3 ? 19.064 22.648 18.265 1.00 34.32 ? 3 DA A OP1 1 ATOM 41 O OP2 . DA A 1 3 ? 17.637 22.261 16.013 1.00 32.94 ? 3 DA A OP2 1 ATOM 42 O "O5'" . DA A 1 3 ? 19.584 20.721 16.797 1.00 26.43 ? 3 DA A "O5'" 1 ATOM 43 C "C5'" . DA A 1 3 ? 20.336 19.935 17.753 1.00 24.85 ? 3 DA A "C5'" 1 ATOM 44 C "C4'" . DA A 1 3 ? 20.395 18.550 17.107 1.00 24.12 ? 3 DA A "C4'" 1 ATOM 45 O "O4'" . DA A 1 3 ? 19.134 17.907 17.208 1.00 23.40 ? 3 DA A "O4'" 1 ATOM 46 C "C3'" . DA A 1 3 ? 20.763 18.550 15.607 1.00 23.81 ? 3 DA A "C3'" 1 ATOM 47 O "O3'" . DA A 1 3 ? 22.013 17.893 15.415 1.00 24.81 ? 3 DA A "O3'" 1 ATOM 48 C "C2'" . DA A 1 3 ? 19.674 17.794 14.903 1.00 23.26 ? 3 DA A "C2'" 1 ATOM 49 C "C1'" . DA A 1 3 ? 19.005 17.056 16.023 1.00 22.09 ? 3 DA A "C1'" 1 ATOM 50 N N9 . DA A 1 3 ? 17.575 16.924 15.757 1.00 20.58 ? 3 DA A N9 1 ATOM 51 C C8 . DA A 1 3 ? 16.688 17.957 15.719 1.00 20.07 ? 3 DA A C8 1 ATOM 52 N N7 . DA A 1 3 ? 15.471 17.584 15.458 1.00 19.71 ? 3 DA A N7 1 ATOM 53 C C5 . DA A 1 3 ? 15.589 16.196 15.314 1.00 19.29 ? 3 DA A C5 1 ATOM 54 C C6 . DA A 1 3 ? 14.589 15.219 15.063 1.00 19.15 ? 3 DA A C6 1 ATOM 55 N N6 . DA A 1 3 ? 13.303 15.530 14.919 1.00 18.73 ? 3 DA A N6 1 ATOM 56 N N1 . DA A 1 3 ? 15.095 13.946 15.025 1.00 18.98 ? 3 DA A N1 1 ATOM 57 C C2 . DA A 1 3 ? 16.410 13.660 15.175 1.00 18.72 ? 3 DA A C2 1 ATOM 58 N N3 . DA A 1 3 ? 17.379 14.530 15.426 1.00 19.10 ? 3 DA A N3 1 ATOM 59 C C4 . DA A 1 3 ? 16.879 15.778 15.500 1.00 19.56 ? 3 DA A C4 1 ATOM 60 P P . DT A 1 4 ? 22.741 18.011 13.894 1.00 30.69 ? 4 DT A P 1 ATOM 61 O OP1 . DT A 1 4 ? 24.157 17.820 14.422 1.00 30.73 ? 4 DT A OP1 1 ATOM 62 O OP2 . DT A 1 4 ? 21.831 18.822 13.088 1.00 30.56 ? 4 DT A OP2 1 ATOM 63 O "O5'" . DT A 1 4 ? 22.336 16.570 13.264 1.00 25.29 ? 4 DT A "O5'" 1 ATOM 64 C "C5'" . DT A 1 4 ? 22.460 15.370 14.006 1.00 24.64 ? 4 DT A "C5'" 1 ATOM 65 C "C4'" . DT A 1 4 ? 21.867 14.269 13.130 1.00 24.39 ? 4 DT A "C4'" 1 ATOM 66 O "O4'" . DT A 1 4 ? 20.460 14.275 13.173 1.00 23.92 ? 4 DT A "O4'" 1 ATOM 67 C "C3'" . DT A 1 4 ? 22.230 14.292 11.625 1.00 24.24 ? 4 DT A "C3'" 1 ATOM 68 O "O3'" . DT A 1 4 ? 22.839 13.005 11.321 1.00 25.35 ? 4 DT A "O3'" 1 ATOM 69 C "C2'" . DT A 1 4 ? 20.915 14.564 10.915 1.00 23.66 ? 4 DT A "C2'" 1 ATOM 70 C "C1'" . DT A 1 4 ? 19.890 14.067 11.865 1.00 22.43 ? 4 DT A "C1'" 1 ATOM 71 N N1 . DT A 1 4 ? 18.629 14.837 11.855 1.00 21.39 ? 4 DT A N1 1 ATOM 72 C C2 . DT A 1 4 ? 17.491 14.050 11.871 1.00 20.53 ? 4 DT A C2 1 ATOM 73 O O2 . DT A 1 4 ? 17.584 12.809 11.844 1.00 20.97 ? 4 DT A O2 1 ATOM 74 N N3 . DT A 1 4 ? 16.311 14.674 11.801 1.00 20.26 ? 4 DT A N3 1 ATOM 75 C C4 . DT A 1 4 ? 16.205 16.011 11.860 1.00 19.91 ? 4 DT A C4 1 ATOM 76 O O4 . DT A 1 4 ? 15.036 16.452 11.881 1.00 19.81 ? 4 DT A O4 1 ATOM 77 C C5 . DT A 1 4 ? 17.365 16.814 11.892 1.00 20.17 ? 4 DT A C5 1 ATOM 78 C C7 . DT A 1 4 ? 17.219 18.322 11.930 1.00 20.14 ? 4 DT A C7 1 ATOM 79 C C6 . DT A 1 4 ? 18.550 16.202 11.887 1.00 20.59 ? 4 DT A C6 1 ATOM 80 P P . DC A 1 5 ? 23.805 12.879 9.923 1.00 30.27 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? 24.735 11.797 10.323 1.00 31.26 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? 24.109 14.325 9.720 1.00 30.83 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? 22.541 12.418 8.919 1.00 26.03 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? 21.966 11.059 8.978 1.00 24.89 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? 20.814 11.061 7.980 1.00 24.44 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? 19.747 11.851 8.513 1.00 23.79 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? 21.131 11.649 6.613 1.00 24.24 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? 20.556 10.814 5.604 1.00 25.39 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? 20.452 13.030 6.624 1.00 23.68 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? 19.244 12.693 7.526 1.00 22.86 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? 18.578 13.935 7.905 1.00 21.73 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? 17.213 13.775 8.102 1.00 20.93 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? 16.764 12.618 8.108 1.00 20.94 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? 16.474 14.890 8.311 1.00 20.43 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? 17.067 16.126 8.337 1.00 20.37 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? 16.292 17.188 8.545 1.00 20.04 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? 18.463 16.289 8.161 1.00 20.67 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? 19.185 15.165 7.926 1.00 21.19 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? 21.485 9.941 4.526 1.00 29.19 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 22.067 8.840 5.450 1.00 29.88 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 22.067 11.078 3.752 1.00 26.31 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 20.216 9.202 3.790 1.00 24.34 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 19.179 8.432 4.420 1.00 22.47 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 18.241 7.817 3.437 1.00 21.95 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 17.219 8.668 2.984 1.00 21.35 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 18.792 7.306 2.092 1.00 21.42 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 17.966 6.202 1.751 1.00 22.34 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 18.662 8.466 1.158 1.00 20.87 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 17.339 9.050 1.607 1.00 19.89 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 17.359 10.533 1.553 1.00 18.64 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 18.443 11.359 1.569 1.00 18.10 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 18.143 12.609 1.585 1.00 17.94 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 16.735 12.612 1.580 1.00 17.54 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 15.814 13.691 1.569 1.00 17.31 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 16.151 14.898 1.575 1.00 17.72 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 14.516 13.309 1.543 1.00 17.12 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 14.129 12.005 1.537 1.00 16.87 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 12.834 11.750 1.500 1.00 16.89 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 14.960 10.966 1.548 1.00 17.40 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 16.249 11.354 1.537 1.00 17.78 ? 6 DG A C4 1 HETATM 121 C C1 . DM8 B 2 . ? 15.379 18.185 5.076 1.00 18.44 ? 7 DM8 A C1 1 HETATM 122 C C2 . DM8 B 2 . ? 16.499 18.977 5.103 1.00 18.60 ? 7 DM8 A C2 1 HETATM 123 C C3 . DM8 B 2 . ? 17.842 18.359 5.065 1.00 18.90 ? 7 DM8 A C3 1 HETATM 124 C C4 . DM8 B 2 . ? 17.904 16.896 4.969 1.00 18.65 ? 7 DM8 A C4 1 HETATM 125 C C5 . DM8 B 2 . ? 16.789 14.665 4.889 1.00 18.15 ? 7 DM8 A C5 1 HETATM 126 C C6 . DM8 B 2 . ? 15.491 12.539 4.852 1.00 18.41 ? 7 DM8 A C6 1 HETATM 127 C C7 . DM8 B 2 . ? 14.174 10.379 4.799 1.00 20.50 ? 7 DM8 A C7 1 HETATM 128 C C8 . DM8 B 2 . ? 12.814 9.817 4.750 1.00 20.33 ? 7 DM8 A C8 1 HETATM 129 C C9 . DM8 B 2 . ? 11.691 10.573 5.354 1.00 20.44 ? 7 DM8 A C9 1 HETATM 130 C C10 . DM8 B 2 . ? 11.626 12.064 4.836 1.00 19.62 ? 7 DM8 A C10 1 HETATM 131 C C11 . DM8 B 2 . ? 13.067 13.974 4.911 1.00 18.29 ? 7 DM8 A C11 1 HETATM 132 C C12 . DM8 B 2 . ? 14.233 16.140 5.007 1.00 17.95 ? 7 DM8 A C12 1 HETATM 133 C C13 . DM8 B 2 . ? 10.370 9.918 5.039 1.00 21.05 ? 7 DM8 A C13 1 HETATM 134 C C14 . DM8 B 2 . ? 10.087 8.901 5.823 1.00 21.57 ? 7 DM8 A C14 1 HETATM 135 C C15 . DM8 B 2 . ? 15.514 16.783 4.996 1.00 18.09 ? 7 DM8 A C15 1 HETATM 136 C C16 . DM8 B 2 . ? 16.710 16.168 4.948 1.00 18.31 ? 7 DM8 A C16 1 HETATM 137 C C17 . DM8 B 2 . ? 15.502 13.932 4.884 1.00 18.19 ? 7 DM8 A C17 1 HETATM 138 C C18 . DM8 B 2 . ? 14.230 14.696 4.905 1.00 18.04 ? 7 DM8 A C18 1 HETATM 139 C C19 . DM8 B 2 . ? 12.974 12.584 4.847 1.00 18.84 ? 7 DM8 A C19 1 HETATM 140 C C20 . DM8 B 2 . ? 14.213 11.946 4.825 1.00 19.15 ? 7 DM8 A C20 1 HETATM 141 C C21 . DM8 B 2 . ? 20.384 16.654 4.959 1.00 19.39 ? 7 DM8 A C21 1 HETATM 142 O O4 . DM8 B 2 . ? 19.064 16.249 4.921 1.00 19.23 ? 7 DM8 A O4 1 HETATM 143 O O5 . DM8 B 2 . ? 17.811 13.952 4.804 1.00 18.66 ? 7 DM8 A O5 1 HETATM 144 O O6 . DM8 B 2 . ? 16.578 11.837 4.836 1.00 18.97 ? 7 DM8 A O6 1 HETATM 145 O O7 . DM8 B 2 . ? 14.845 10.098 6.058 1.00 22.43 ? 7 DM8 A O7 1 HETATM 146 O O9 . DM8 B 2 . ? 11.741 10.637 6.811 1.00 20.58 ? 7 DM8 A O9 1 HETATM 147 O O11 . DM8 B 2 . ? 11.904 14.719 4.991 1.00 18.71 ? 7 DM8 A O11 1 HETATM 148 O O12 . DM8 B 2 . ? 13.221 16.823 5.028 1.00 18.27 ? 7 DM8 A O12 1 HETATM 149 O O13 . DM8 B 2 . ? 9.345 10.247 4.030 1.00 22.57 ? 7 DM8 A O13 1 HETATM 150 C "C1'" . DM8 B 2 . ? 15.674 9.000 6.213 1.00 25.08 ? 7 DM8 A "C1'" 1 HETATM 151 C "C2'" . DM8 B 2 . ? 16.317 9.050 7.675 1.00 25.67 ? 7 DM8 A "C2'" 1 HETATM 152 C "C3'" . DM8 B 2 . ? 15.202 8.803 8.652 1.00 26.20 ? 7 DM8 A "C3'" 1 HETATM 153 C "C4'" . DM8 B 2 . ? 14.505 7.413 8.439 1.00 25.99 ? 7 DM8 A "C4'" 1 HETATM 154 C "C5'" . DM8 B 2 . ? 13.761 7.483 7.051 1.00 25.82 ? 7 DM8 A "C5'" 1 HETATM 155 C "C6'" . DM8 B 2 . ? 13.134 6.168 6.555 1.00 25.66 ? 7 DM8 A "C6'" 1 HETATM 156 O "O5'" . DM8 B 2 . ? 14.825 7.764 6.021 1.00 25.32 ? 7 DM8 A "O5'" 1 HETATM 157 O "O4'" . DM8 B 2 . ? 13.553 7.182 9.560 1.00 26.34 ? 7 DM8 A "O4'" 1 HETATM 158 N "N3'" . DM8 B 2 . ? 15.640 8.814 10.141 1.00 25.96 ? 7 DM8 A "N3'" 1 HETATM 159 BR BR . DM8 B 2 . ? 17.862 8.047 7.574 1.00 28.76 ? 7 DM8 A BR 1 HETATM 160 O O . HOH C 3 . ? 19.803 8.469 11.108 1.00 43.78 ? 8 HOH A O 1 HETATM 161 O O . HOH C 3 . ? 17.688 10.609 10.195 1.00 31.83 ? 9 HOH A O 1 HETATM 162 O O . HOH C 3 . ? 20.923 18.435 10.670 1.00 38.79 ? 10 HOH A O 1 HETATM 163 O O . HOH C 3 . ? 20.432 21.199 13.061 1.00 36.10 ? 11 HOH A O 1 HETATM 164 O O . HOH C 3 . ? 19.460 22.531 20.276 1.00 45.47 ? 12 HOH A O 1 HETATM 165 O O . HOH C 3 . ? 17.957 19.606 8.316 1.00 36.28 ? 13 HOH A O 1 HETATM 166 O O . HOH C 3 . ? 22.508 18.766 7.184 1.00 54.14 ? 14 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 14.662 21.151 7.403 1.00 53.98 ? 15 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 21.038 24.629 16.095 1.00 69.34 ? 16 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 19.811 14.435 2.370 1.00 34.71 ? 17 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 13.696 8.222 1.414 1.00 49.33 ? 18 HOH A O 1 HETATM 171 O O . HOH C 3 . ? 9.283 11.823 1.841 1.00 34.41 ? 19 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 8.451 12.760 24.996 1.00 36.66 ? 20 HOH A O 1 HETATM 173 O O . HOH C 3 . ? 13.500 18.747 12.052 1.00 37.09 ? 21 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 12.653 18.670 14.791 1.00 38.15 ? 22 HOH A O 1 HETATM 175 O O . HOH C 3 . ? 13.095 19.342 8.423 1.00 40.95 ? 23 HOH A O 1 HETATM 176 O O . HOH C 3 . ? 15.546 25.555 18.901 1.00 47.40 ? 24 HOH A O 1 HETATM 177 O O . HOH C 3 . ? 17.735 22.216 -1.180 1.00 52.89 ? 25 HOH A O 1 HETATM 178 O O . HOH C 3 . ? 11.462 22.052 19.194 1.00 41.84 ? 26 HOH A O 1 HETATM 179 O O . HOH C 3 . ? 9.134 21.681 20.203 1.00 51.69 ? 27 HOH A O 1 HETATM 180 O O . HOH C 3 . ? 24.903 8.909 8.334 1.00 59.33 ? 28 HOH A O 1 HETATM 181 O O . HOH C 3 . ? 14.820 6.772 3.261 1.00 42.88 ? 29 HOH A O 1 HETATM 182 O O . HOH C 3 . ? 4.177 19.121 9.456 1.00 71.91 ? 30 HOH A O 1 HETATM 183 O O . HOH C 3 . ? 18.070 16.525 1.377 1.00 32.15 ? 31 HOH A O 1 HETATM 184 O O . HOH C 3 . ? 26.344 17.404 12.786 1.00 72.51 ? 32 HOH A O 1 HETATM 185 O O . HOH C 3 . ? 11.370 9.387 0.961 1.00 39.88 ? 33 HOH A O 1 HETATM 186 O O . HOH C 3 . ? 16.918 9.480 12.805 1.00 34.84 ? 34 HOH A O 1 HETATM 187 O O . HOH C 3 . ? 22.687 16.039 8.070 1.00 41.07 ? 35 HOH A O 1 HETATM 188 O O . HOH C 3 . ? 18.277 25.076 20.381 1.00 60.81 ? 36 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 10.623 19.070 6.314 1.00 57.77 ? 37 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 13.592 24.718 4.968 1.00 63.98 ? 38 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 21.538 6.904 8.366 1.00 52.38 ? 39 HOH A O 1 HETATM 192 O O . HOH C 3 . ? -0.039 7.589 9.486 1.00 62.14 ? 40 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 16.654 6.118 11.428 1.00 53.11 ? 41 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 13.612 21.134 10.649 1.00 52.34 ? 42 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 22.572 7.100 11.185 1.00 70.59 ? 43 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 23.791 14.033 -0.902 1.00 56.66 ? 44 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 17.055 25.620 7.406 1.00 62.88 ? 45 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 14.162 21.538 14.631 1.00 51.44 ? 46 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 8.842 19.491 10.408 1.00 56.81 ? 47 HOH A O 1 HETATM 200 O O . HOH C 3 . ? 19.606 21.350 10.798 1.00 47.95 ? 48 HOH A O 1 HETATM 201 O O . HOH C 3 . ? 10.666 25.561 22.490 1.00 53.93 ? 49 HOH A O 1 HETATM 202 O O . HOH C 3 . ? 6.651 9.385 2.770 1.00 47.37 ? 50 HOH A O 1 HETATM 203 O O . HOH C 3 . ? 23.685 14.014 2.973 1.00 55.30 ? 51 HOH A O 1 HETATM 204 O O . HOH C 3 . ? 5.280 11.195 0.642 1.00 55.78 ? 52 HOH A O 1 #