Structure based on 3b5j

Ideal structure
Name: 2',3'-o-[(1r,6r)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate)
Formula: C16 H16 N8 O16 P2
Weight: 638.290
SMILES: "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH]4O[C]5(O[CH]34)[CH](C=C(C=C5[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O"
Spacial conformation based on PDB 3b5j.
Also present on 3ar6
RESIDUE   12D     58
CONECT      P1     4 O1   O2   O3   O6  
CONECT      O1     2 P1   H14 
CONECT      O2     1 P1  
CONECT      O3     2 P1   H15 
CONECT      P2     4 O4   O5   O6   O7  
CONECT      O4     1 P2  
CONECT      O5     2 P2   H16 
CONECT      O6     2 P1   P2  
CONECT      O7     2 P2   C1  
CONECT      C1     4 O7   C2   H1   H2  
CONECT      C2     4 C1   O8   C3   H3  
CONECT      O8     2 C2   C5  
CONECT      C3     4 C2   O9   C4   H4  
CONECT      O9     2 C3   C11 
CONECT      C4     4 C3   O10  C5   H5  
CONECT      O10    2 C4   C11 
CONECT      C5     4 O8   C4   N1   H6  
CONECT      N1     3 C5   C6   C10 
CONECT      C6     3 N1   N2   H7  
CONECT      N2     2 C6   C7  
CONECT      C7     3 N2   C8   C10 
CONECT      C8     3 C7   N3   N4  
CONECT      N3     3 C8   H8   H9  
CONECT      N4     2 C8   C9  
CONECT      C9     3 N4   N5   H10 
CONECT      N5     2 C9   C10 
CONECT      C10    3 N1   C7   N5  
CONECT      C11    4 O9   O10  C12  C16 
CONECT      C12    4 C11  C13  N6   H11 
CONECT      C13    3 C12  C14  H12 
CONECT      C14    3 C13  C15  N7  
CONECT      C15    3 C14  C16  H13 
CONECT      C16    3 C11  C15  N8  
CONECT      N6     3 C12  O11  O12 
CONECT      N7     3 C14  O13  O14 
CONECT      N8     3 C16  O15  O16 
CONECT      O11    1 N6  
CONECT      O12    1 N6  
CONECT      O13    1 N7  
CONECT      O14    1 N7  
CONECT      O15    1 N8  
CONECT      O16    1 N8  
CONECT      H1     1 C1  
CONECT      H2     1 C1  
CONECT      H3     1 C2  
CONECT      H4     1 C3  
CONECT      H5     1 C4  
CONECT      H6     1 C5  
CONECT      H7     1 C6  
CONECT      H8     1 N3  
CONECT      H9     1 N3  
CONECT      H10    1 C9  
CONECT      H11    1 C12 
CONECT      H12    1 C13 
CONECT      H13    1 C15 
CONECT      H14    1 O1  
CONECT      H15    1 O3  
CONECT      H16    1 O5  
END   
HET    12D             58
HETNAM     12D 2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-
HETNAM   2 12D diyl]adenosine 5'-(trihydrogen diphosphate)
FORMUL      12D    C16 H16 N8 O16 P2

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science