Structure based on ?

Ideal structure
Name: adenosine-5'-[trihydrogen diphosphate] p'-3'-ester with 2'-deoxyuridine
Formula: C19 H25 N7 O14 P2
Weight: 637.388
SMILES: "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4C[CH](O[CH]4CO)N5C=CC(=O)NC5=O)[CH](O)[CH]3O"
Spacial conformation based on PDB ?.
Also present on 1jn4
RESIDUE   139     67
CONECT      PA     4 O1A  O2A  O5D  O3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   HOA2
CONECT      O5D    2 PA   C5D 
CONECT      PB     4 O1B  O2B  O3A  O3B 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   HOB2
CONECT      O3A    2 PA   PB  
CONECT      N9A    3 C4A  C8A  C1D 
CONECT      C4A    3 N9A  N3A  C5A 
CONECT      N3A    2 C4A  C2A 
CONECT      C2A    3 N3A  N1A  H2A 
CONECT      N1A    2 C2A  C6A 
CONECT      C6A    3 N1A  N6A  C5A 
CONECT      N6A    3 C6A  H6A1 H6A2
CONECT      C5A    3 C4A  C6A  N7A 
CONECT      N7A    2 C5A  C8A 
CONECT      C8A    3 N9A  N7A  H8A 
CONECT      C5D    4 O5D  C4D  HA51 HA52
CONECT      C4D    4 C5D  O4D  C3D  H4D 
CONECT      O4D    2 C4D  C1D 
CONECT      C1D    4 N9A  O4D  C2D  H1D 
CONECT      C2D    4 C1D  O2D  C3D  H2D 
CONECT      O2D    2 C2D  HD2 
CONECT      C3D    4 C4D  C2D  O3D  H3D 
CONECT      O3D    2 C3D  HD3 
CONECT      O5B    2 C5B  HB5 
CONECT      C5B    4 O5B  C4B  HU51 HU52
CONECT      C4B    4 C5B  O4B  C3B  H4B 
CONECT      O4B    2 C4B  C1B 
CONECT      C1B    4 O4B  C2B  N1U  H1B 
CONECT      C2B    4 C1B  C3B  HU21 HU22
CONECT      C3B    4 C4B  C2B  O3B  H3B 
CONECT      O3B    2 PB   C3B 
CONECT      N1U    3 C1B  C6U  C2U 
CONECT      C6U    3 N1U  C5U  H6U 
CONECT      C2U    3 N1U  O2U  N3U 
CONECT      O2U    1 C2U 
CONECT      N3U    3 C2U  C4U  HN3U
CONECT      C4U    3 N3U  O4U  C5U 
CONECT      O4U    1 C4U 
CONECT      C5U    3 C6U  C4U  H5U 
CONECT      HOA2   1 O2A 
CONECT      HOB2   1 O2B 
CONECT      H2A    1 C2A 
CONECT      H6A1   1 N6A 
CONECT      H6A2   1 N6A 
CONECT      H8A    1 C8A 
CONECT      HA51   1 C5D 
CONECT      HA52   1 C5D 
CONECT      H4D    1 C4D 
CONECT      H1D    1 C1D 
CONECT      H2D    1 C2D 
CONECT      HD2    1 O2D 
CONECT      H3D    1 C3D 
CONECT      HD3    1 O3D 
CONECT      HB5    1 O5B 
CONECT      HU51   1 C5B 
CONECT      HU52   1 C5B 
CONECT      H4B    1 C4B 
CONECT      H1B    1 C1B 
CONECT      HU21   1 C2B 
CONECT      HU22   1 C2B 
CONECT      H3B    1 C3B 
CONECT      H6U    1 C6U 
CONECT      HN3U   1 N3U 
CONECT      H5U    1 C5U 
END   
HET    139             67
HETNAM     139 ADENOSINE-5'-[TRIHYDROGEN DIPHOSPHATE] P'-3'-ESTER WITH
HETNAM   2 139  2'-DEOXYURIDINE
FORMUL      139    C19 H25 N7 O14 P2

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science