Structure based on 2c3p

Ideal structure
Name: 1-(2-{(2s,4r,5r)-3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1s)-1-carboxy-1-hydroxyethyl]-4-methyl-1,3-thiazolidin-5-yl}ethoxy)-1,1,3,3-tetrahydroxy-1lambda~5~-diphosphox-1-en-2-ium 3-oxide
Formula: C15 H26 N4 O10 P2 S
Weight: 516.400
SMILES: "C[CH]1[CH](CCO[P](O)(=O)O[P](O)(O)=O)S[CH](N1Cc2cnc(C)nc2N)[C](C)(O)C(O)=O"
Spacial conformation based on PDB 2c3p
RESIDUE   1TP     58
CONECT      N1'    2 C2'  C6' 
CONECT      C2'    3 N1'  C2A  N3' 
CONECT      C2A    4 C2'  H2A1 H2A2 H2A3
CONECT      N3'    2 C2'  C4' 
CONECT      C4'    3 N3'  N4'  C5' 
CONECT      N4'    3 C4'  H4'1 H4'2
CONECT      C5'    3 C4'  C6'  C7' 
CONECT      C6'    3 N1'  C5'  H6' 
CONECT      C7'    4 C5'  N3   H7'1 H7'2
CONECT      N3     3 C7'  C2   C4  
CONECT      C2     4 N3   S1   C15  H2  
CONECT      S1     2 C2   C5  
CONECT      C5     4 S1   C4   C5A  H5  
CONECT      C4     4 N3   C5   C4A  H4  
CONECT      C4A    4 C4   H4A1 H4A2 H4A3
CONECT      C5A    4 C5   C5B  H5A1 H5A2
CONECT      C5B    4 C5A  O5G  H5B1 H5B2
CONECT      O5G    2 C5B  P1  
CONECT      P1     4 O5G  O11  O12  O13 
CONECT      O11    2 P1   P2  
CONECT      O12    1 P1  
CONECT      O13    2 P1   HO13
CONECT      P2     4 O11  O21  O22  O23 
CONECT      O21    1 P2  
CONECT      O22    2 P2   H6B1
CONECT      O23    2 P2   HO23
CONECT      C15    4 C2   O25  C35  C25 
CONECT      O25    2 C15  H25 
CONECT      C35    4 C15  H351 H352 H353
CONECT      C25    3 C15  O35  O45 
CONECT      O35    1 C25 
CONECT      O45    2 C25  H45 
CONECT      H2A1   1 C2A 
CONECT      H2A2   1 C2A 
CONECT      H2A3   1 C2A 
CONECT      H4'1   1 N4' 
CONECT      H4'2   1 N4' 
CONECT      H6'    1 C6' 
CONECT      H7'1   1 C7' 
CONECT      H7'2   1 C7' 
CONECT      H2     1 C2  
CONECT      H5     1 C5  
CONECT      H4     1 C4  
CONECT      H4A1   1 C4A 
CONECT      H4A2   1 C4A 
CONECT      H4A3   1 C4A 
CONECT      H5A1   1 C5A 
CONECT      H5A2   1 C5A 
CONECT      H5B1   1 C5B 
CONECT      H5B2   1 C5B 
CONECT      HO13   1 O13 
CONECT      H6B1   1 O22 
CONECT      HO23   1 O23 
CONECT      H25    1 O25 
CONECT      H351   1 C35 
CONECT      H352   1 C35 
CONECT      H353   1 C35 
CONECT      H45    1 O45 
END   
HET    1TP             58
HETNAM     1TP 1-(2-{(2S,4R,5R)-3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)MET
HETNAM   2 1TP HYL]-2-[(1S)-1-CARBOXY-1-HYDROXYETHYL]-4-METHYL-1,3-THI
HETNAM   3 1TP AZOLIDIN-5-YL}ETHOXY)-1,1,3,3-TETRAHYDROXY-1LAMBDA~5~-D
HETNAM   4 1TP IPHOSPHOX-1-EN-2-IUM 3-OXIDE
FORMUL      1TP    C15 H26 N4 O10 P2 S1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science