Structure based on 3bdp | Ideal structure |
|
Name: 3'-deoxythymidine-5'-monophosphate |
Formula: C10 H15 N2 O7 P |
Weight: 306.209 |
SMILES: "CC1=CN([CH]2CC[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O" |
Spacial conformation based on PDB
3bdp. Also present in other
36 PDB entries. |
RESIDUE 2DT 35
CONECT P 4 OP1 OP2 OP3 O5'
CONECT OP1 1 P
CONECT OP2 2 P HOP2
CONECT OP3 2 P HOP3
CONECT O5' 2 P C5'
CONECT N1 3 C6 C2 C1'
CONECT C6 3 N1 C5 H6
CONECT C2 3 N1 O2 N3
CONECT O2 1 C2
CONECT N3 3 C2 C4 HN3
CONECT C4 3 N3 O4 C5
CONECT O4 1 C4
CONECT C5 3 C6 C4 C5M
CONECT C5M 4 C5 H71 H72 H73
CONECT C2' 4 C1' C3' H2' H2''
CONECT C5' 4 O5' C4' H5' H5''
CONECT C4' 4 C5' O4' C3' H4'
CONECT O4' 2 C4' C1'
CONECT C1' 4 N1 C2' O4' H1'
CONECT C3' 4 C2' C4' H3'1 H3'2
CONECT HOP2 1 OP2
CONECT HOP3 1 OP3
CONECT H6 1 C6
CONECT HN3 1 N3
CONECT H71 1 C5M
CONECT H72 1 C5M
CONECT H73 1 C5M
CONECT H2' 1 C2'
CONECT H2'' 1 C2'
CONECT H5' 1 C5'
CONECT H5'' 1 C5'
CONECT H4' 1 C4'
CONECT H1' 1 C1'
CONECT H3'1 1 C3'
CONECT H3'2 1 C3'
END
HET 2DT 35
HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE
HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
FORMUL 2DT C10 H15 N2 O7 P1