Structure based on 1tmo | Ideal structure |
|
Name: guanylate-o'-phosphoric acid mono-(2-amino-5,6-dimercapto-4-oxo-3,5,6,7,8a,9,10,10a-octahydro-4h-8-oxa-1,3,9,10-tetraaza-anthracen-7-ylmethyl) ester |
Formula: C20 H28 N10 O13 P2 S2 |
Weight: 742.573 |
SMILES: "NC1=NC2=C(N[CH]3[CH](S)[CH](S)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6C(=O)NC(=Nc56)N)O[CH]3N2)C(=O)N1" |
Spacial conformation based on PDB
1tmo. Also present on 1h0h, 2iv2 |
RESIDUE 2MD 75
CONECT PB 4 O3B O1B O2B O3A
CONECT O3B 2 PB PA
CONECT O1B 1 PB
CONECT O2B 2 PB HO2B
CONECT O3A 2 PB C10
CONECT C10 4 O3A C11 H101 H102
CONECT C11 4 C10 O11 C12 H11
CONECT O11 2 C11 C7
CONECT C12 4 C11 S12 C13 H12
CONECT S12 2 C12 HS2
CONECT C13 4 C12 S13 C14 H13
CONECT S13 2 C13 HS3
CONECT C14 4 C13 N15 C7 H14
CONECT N15 3 C14 C16 HNF
CONECT C16 3 N15 C15 C20
CONECT C15 3 C16 O14 N17
CONECT O14 1 C15
CONECT N17 3 C15 C17 HNH
CONECT C17 3 N17 N16 N18
CONECT N16 3 C17 HNG1 HNG2
CONECT N18 2 C17 C20
CONECT C20 3 C16 N18 N8
CONECT N8 3 C20 C7 HN8
CONECT C7 4 O11 C14 N8 H7
CONECT PA 4 O3B O1A O2A O5'
CONECT O1A 1 PA
CONECT O2A 2 PA HO2A
CONECT O5' 2 PA C5'
CONECT C5' 4 O5' C4' H5'1 H5'2
CONECT C4' 4 C5' O4' C3' H4'
CONECT O4' 2 C4' C1'
CONECT C1' 4 O4' N9 C2' H1'
CONECT N9 3 C1' C4 C8
CONECT C4 3 N9 N3 C5
CONECT N3 2 C4 C2
CONECT C2 3 N3 N2 N1
CONECT N2 3 C2 HN21 HN22
CONECT N1 3 C2 C6 HN1
CONECT C6 3 N1 O6 C5
CONECT O6 1 C6
CONECT C5 3 C4 C6 N7
CONECT N7 2 C5 C8
CONECT C8 3 N9 N7 H8
CONECT C2' 4 C1' O2' C3' H2'
CONECT O2' 2 C2' HO2'
CONECT C3' 4 C4' C2' O3' H3'
CONECT O3' 2 C3' HO3'
CONECT HO2B 1 O2B
CONECT H101 1 C10
CONECT H102 1 C10
CONECT H11 1 C11
CONECT H12 1 C12
CONECT HS2 1 S12
CONECT H13 1 C13
CONECT HS3 1 S13
CONECT H14 1 C14
CONECT HNF 1 N15
CONECT HNH 1 N17
CONECT HNG1 1 N16
CONECT HNG2 1 N16
CONECT HN8 1 N8
CONECT H7 1 C7
CONECT HO2A 1 O2A
CONECT H5'1 1 C5'
CONECT H5'2 1 C5'
CONECT H4' 1 C4'
CONECT H1' 1 C1'
CONECT HN21 1 N2
CONECT HN22 1 N2
CONECT HN1 1 N1
CONECT H8 1 C8
CONECT H2' 1 C2'
CONECT HO2' 1 O2'
CONECT H3' 1 C3'
CONECT HO3' 1 O3'
END
HET 2MD 75
HETSYN 2MD MOLYBDENUM COFACTOR,BIS (MOLYBDOPTERIN GUANINE DINUCLEO
HETSYN 2 2MD TIDE)
HETNAM 2MD GUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAP
HETNAM 2 2MD TO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,1
HETNAM 3 2MD 0-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER
FORMUL 2MD C20 H28 N10 O13 P2 S2