Structure based on 2hc7
Name: 5-methyl-2'-se-methyl-2'-selenouridine 5'-(dihydrogen phosphate)
Formula: C11 H17 N2 O8 P Se
Weight: 415.195
SMILES: "C[Se][CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O"
Spacial conformation based on PDB 2hc7.
Also present on 4fp6, 4h5a, 4i1g
RESIDUE   2ST     40
CONECT      OP3    2 P    HOP3
CONECT      P      4 OP3  OP1  OP2  O5' 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      O5'    2 P    C5' 
CONECT      N1     3 C6   C2   C1' 
CONECT      C6     3 N1   C5   H6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C6   C4   C5A 
CONECT      C5A    4 C5   H5A1 H5A2 H5A3
CONECT      C2'    4 C1'  C3'  SE   H2' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      SE     2 C2'  CA' 
CONECT      CA'    4 SE   HA'1 HA'2 HA'3
CONECT      O3'    2 C3'  HO3'
CONECT      HOP3   1 OP3 
CONECT      HOP2   1 OP2 
CONECT      H6     1 C6  
CONECT      HN3    1 N3  
CONECT      H5A1   1 C5A 
CONECT      H5A2   1 C5A 
CONECT      H5A3   1 C5A 
CONECT      H2'    1 C2' 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H3'    1 C3' 
CONECT      HA'1   1 CA' 
CONECT      HA'2   1 CA' 
CONECT      HA'3   1 CA' 
CONECT      HO3'   1 O3' 
END   
HET    2ST             40
HETNAM     2ST 5-METHYL-2'-SE-METHYL-2'-SELENOURIDINE 5'-(DIHYDROGEN P
HETNAM   2 2ST HOSPHATE)
FORMUL      2ST    C11 H17 N2 O8 P1 Se1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science