Structure based on 4req

Ideal structure
Name: 5'-deoxyadenosine
Formula: C10 H13 N5 O3
Weight: 251.242
SMILES: "C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"
Spacial conformation based on PDB 4req.
Also present in other 75 PDB entries.
RESIDUE   5AD     31
CONECT      N1     2 C2   C6  
CONECT      C2     3 N1   N3   H2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N9   C5  
CONECT      N9     3 C4   C8   C1' 
CONECT      C8     3 N9   N7   H8  
CONECT      N7     2 C8   C5  
CONECT      C5     3 C4   N7   C6  
CONECT      C6     3 N1   C5   N6  
CONECT      N6     3 C6   HN61 HN62
CONECT      C1'    4 N9   C2'  O4'  H1' 
CONECT      C2'    4 C1'  C3'  O2'  H2' 
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  C5'  O4'  H4' 
CONECT      C5'    4 C4'  H5'1 H5'2 H5'3
CONECT      O4'    2 C1'  C4' 
CONECT      O2'    2 C2'  HO2'
CONECT      O3'    2 C3'  HO3'
CONECT      H2     1 C2  
CONECT      H8     1 C8  
CONECT      HN61   1 N6  
CONECT      HN62   1 N6  
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H5'3   1 C5' 
CONECT      HO2'   1 O2' 
CONECT      HO3'   1 O3' 
END   
HET    5AD             31
HETNAM     5AD 5'-DEOXYADENOSINE
FORMUL      5AD    C10 H13 N5 O3

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science