Structure based on 1rwq

Ideal structure
Name: 5-(aminomethyl)-6-(2,4-dichlorophenyl)-2-(3,5-dimethoxyphenyl)pyrimidin-4-amine
Formula: C19 H18 Cl2 N4 O2
Weight: 405.278
SMILES: "COc1cc(OC)cc(c1)c2nc(N)c(CN)c(n2)c3ccc(Cl)cc3Cl"
Spacial conformation based on PDB 1rwq
RESIDUE   5AP     45
CONECT      CL2    1 C17 
CONECT      C17    3 CL2  C16  C11 
CONECT      C16    3 C17  C14  H16 
CONECT      C14    3 C16  CL1  C13 
CONECT      CL1    1 C14 
CONECT      C13    3 C14  C12  H13 
CONECT      C12    3 C13  C11  H12 
CONECT      C11    3 C17  C12  C10 
CONECT      C10    3 C11  C19  N9  
CONECT      C19    3 C10  C20  C22 
CONECT      C20    4 C19  N21  H201 H202
CONECT      N21    3 C20  H211 H212
CONECT      C22    3 C19  N23  N1  
CONECT      N23    3 C22  H231 H232
CONECT      N9     2 C10  C2  
CONECT      C2     3 N9   N1   C3  
CONECT      N1     2 C22  C2  
CONECT      C3     3 C2   C4   C8  
CONECT      C4     3 C3   C5   H4  
CONECT      C5     3 C4   O25  C6  
CONECT      O25    2 C5   C28 
CONECT      C28    4 O25  H281 H282 H283
CONECT      C6     3 C5   C7   H6  
CONECT      C7     3 C6   C8   O26 
CONECT      C8     3 C3   C7   H8  
CONECT      O26    2 C7   C29 
CONECT      C29    4 O26  H291 H292 H293
CONECT      H16    1 C16 
CONECT      H13    1 C13 
CONECT      H12    1 C12 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H211   1 N21 
CONECT      H212   1 N21 
CONECT      H231   1 N23 
CONECT      H232   1 N23 
CONECT      H4     1 C4  
CONECT      H281   1 C28 
CONECT      H282   1 C28 
CONECT      H283   1 C28 
CONECT      H6     1 C6  
CONECT      H8     1 C8  
CONECT      H291   1 C29 
CONECT      H292   1 C29 
CONECT      H293   1 C29 
END   
HET    5AP             45
HETNAM     5AP 5-(AMINOMETHYL)-6-(2,4-DICHLOROPHENYL)-2-(3,5-DIMETHOXY
HETNAM   2 5AP PHENYL)PYRIMIDIN-4-AMINE
FORMUL      5AP    C19 H18 Cl2 N4 O2

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science