Structure based on 1ehl

Ideal structure
Name: 5-hydroxy-thymidine
Formula: C10 H16 N2 O6
Weight: 260.244
SMILES: "C[C]1(O)CN([CH]2C[CH](O)[CH](CO)O2)C(=O)NC1=O"
Spacial conformation based on PDB 1ehl
RESIDUE   5HT     34
CONECT      O5'    2 C5'  HO5'
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  C1'  H2'  H2''
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   H3  
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     4 C4   C5M  O5   C6  
CONECT      C5M    4 C5   H71  H72  H73 
CONECT      O5     2 C5   HO5 
CONECT      C6     4 N1   C5   H61  H62 
CONECT      HO5'   1 O5' 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H3     1 N3  
CONECT      H71    1 C5M 
CONECT      H72    1 C5M 
CONECT      H73    1 C5M 
CONECT      HO5    1 O5  
CONECT      H61    1 C6  
CONECT      H62    1 C6  
END   
HET    5HT             34
HETNAM     5HT 5-HYDROXY-THYMIDINE
FORMUL      5HT    C10 H16 N2 O6

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science