Structure based on 1mrs

Ideal structure
Name: 5-hydroxymethyluridine-2'-deoxy-5'-monophosphate
Formula: C10 H15 N2 O9 P
Weight: 338.208
SMILES: "OCC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"
Spacial conformation based on PDB 1mrs.
Also present in other 8 PDB entries.
RESIDUE   5HU     37
CONECT      P      4 OP1  OP2  OP3  O5' 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HO2P
CONECT      OP3    2 P    HO3P
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  HC4'
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  HC3'
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  C1'  H2'  H2''
CONECT      C1'    4 O4'  C2'  N1   HC1'
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C5A  C6  
CONECT      C5A    4 C5   O5B  H5A1 H5A2
CONECT      C6     3 N1   C5   HC6 
CONECT      O5B    2 C5A  HO5B
CONECT      HO2P   1 OP2 
CONECT      HO3P   1 OP3 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      HC4'   1 C4' 
CONECT      HC3'   1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      HC1'   1 C1' 
CONECT      HN3    1 N3  
CONECT      H5A1   1 C5A 
CONECT      H5A2   1 C5A 
CONECT      HC6    1 C6  
CONECT      HO5B   1 O5B 
END   
HET    5HU             37
HETNAM     5HU 5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE
FORMUL      5HU    C10 H15 N2 O9 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science