Structure based on 1nqw |
Ideal structure |
|
| Name: 5-(6-d-ribitylamino-2,4(1h,3h)pyrimidinedione-5-yl) pentyl-1-phosphonic acid |
| Formula: C14 H26 N3 O9 P |
| Weight: 411.345 |
| SMILES: "OC[CH](O)[CH](O)[CH](O)CNC1=C(CCCCC[P](O)(O)=O)C(=O)NC(=O)N1" |
| Spacial conformation based on PDB
1nqw |
RESIDUE 5YL 53
CONECT O3P 2 P HOP3
CONECT P 4 O3P O1P O2P C17
CONECT O1P 1 P
CONECT O2P 2 P HOP2
CONECT C17 4 P C16 H171 H172
CONECT C16 4 C17 C15 H161 H162
CONECT C15 4 C16 C14 H151 H152
CONECT C14 4 C15 C13 H141 H142
CONECT C13 4 C14 C5 H131 H132
CONECT C5 3 C13 C4 C6
CONECT C4 3 C5 O4 N3
CONECT O4 1 C4
CONECT N3 3 C4 C2 HN3
CONECT C2 3 N3 O2 N1
CONECT O2 1 C2
CONECT N1 3 C2 C6 HN1
CONECT C6 3 C5 N1 N7
CONECT N7 3 C6 C8 HN7
CONECT C8 4 N7 C9 H81 H82
CONECT C9 4 C8 O9 C10 H91
CONECT O9 2 C9 HO9
CONECT C10 4 C9 O10 C11 H101
CONECT O10 2 C10 H10O
CONECT C11 4 C10 O11 C12 H111
CONECT O11 2 C11 H11O
CONECT C12 4 C11 O12 H121 H122
CONECT O12 2 C12 H12O
CONECT HOP3 1 O3P
CONECT HOP2 1 O2P
CONECT H171 1 C17
CONECT H172 1 C17
CONECT H161 1 C16
CONECT H162 1 C16
CONECT H151 1 C15
CONECT H152 1 C15
CONECT H141 1 C14
CONECT H142 1 C14
CONECT H131 1 C13
CONECT H132 1 C13
CONECT HN3 1 N3
CONECT HN1 1 N1
CONECT HN7 1 N7
CONECT H81 1 C8
CONECT H82 1 C8
CONECT H91 1 C9
CONECT HO9 1 O9
CONECT H101 1 C10
CONECT H10O 1 O10
CONECT H111 1 C11
CONECT H11O 1 O11
CONECT H121 1 C12
CONECT H122 1 C12
CONECT H12O 1 O12
END
HET 5YL 53
HETNAM 5YL 5-(6-D-RIBITYLAMINO-2,4(1H,3H)PYRIMIDINEDIONE-5-YL) PEN
HETNAM 2 5YL TYL-1-PHOSPHONIC ACID
FORMUL 5YL C14 H26 N3 O9 P1
MONOMER page