Structure based on 1ejz | Ideal structure |
|
Name: 1',5'-anhydro-2',3'-dideoxy-2'-(cytosin-1-yl)-6'-o-phosphoryl-d-arabino-hexitol |
Formula: C10 H16 N3 O7 P |
Weight: 321.224 |
SMILES: "NC1=NC(=O)N(C=C1)[CH]2CO[CH](CO[P](O)(O)=O)[CH](O)C2" |
Spacial conformation based on PDB
1ejz. Also present in other
6 PDB entries. |
RESIDUE 6HC 37
CONECT P 4 OP1 OP2 OP3 O5'
CONECT OP1 1 P
CONECT OP2 2 P HOP2
CONECT OP3 2 P HOP3
CONECT O5' 2 P C5'
CONECT C5' 4 O5' C4' H5' H5''
CONECT C4' 4 C5' O4' C3' H4'
CONECT O4' 2 C4' C6'
CONECT C3' 4 C4' O3' C2' H3'
CONECT O3' 2 C3' HO3'
CONECT C2' 4 C3' C1' H2' H2''
CONECT C1' 4 C2' C6' N1 H1'
CONECT C6' 4 O4' C1' H6'1 H6'2
CONECT N1 3 C1' C2 C6
CONECT C2 3 N1 O2 N3
CONECT O2 1 C2
CONECT N3 2 C2 C4
CONECT C4 3 N3 N4 C5
CONECT N4 3 C4 H41 H42
CONECT C5 3 C4 C6 H5
CONECT C6 3 N1 C5 H6
CONECT HOP2 1 OP2
CONECT HOP3 1 OP3
CONECT H5' 1 C5'
CONECT H5'' 1 C5'
CONECT H4' 1 C4'
CONECT H3' 1 C3'
CONECT HO3' 1 O3'
CONECT H2' 1 C2'
CONECT H2'' 1 C2'
CONECT H1' 1 C1'
CONECT H6'1 1 C6'
CONECT H6'2 1 C6'
CONECT H41 1 N4
CONECT H42 1 N4
CONECT H5 1 C5
CONECT H6 1 C6
END
HET 6HC 37
HETNAM 6HC 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(CYTOSIN-1-YL)-6'-O-PHOS
HETNAM 2 6HC PHORYL-D-ARABINO-HEXITOL
FORMUL 6HC C10 H16 N3 O7 P1