Structure based on 1ejz

Ideal structure
Name: 1',5'-anhydro-2',3'-dideoxy-2'-(thymin-1-yl)-6'-o-phosphoryl-d-arabino-hexitol
Formula: C11 H17 N2 O8 P
Weight: 336.235
SMILES: "CC1=CN([CH]2CO[CH](CO[P](O)(O)=O)[CH](O)C2)C(=O)NC1=O"
Spacial conformation based on PDB 1ejz.
Also present on 1d7z, 1ec4, 2bj6, 481d
RESIDUE   6HT     39
CONECT      P      4 OP1  OP2  OP3  O5' 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      OP3    2 P    HOP3
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C6' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  C1'  H2'  H2''
CONECT      C1'    4 C2'  C6'  N1   H1' 
CONECT      C6'    4 O4'  C1'  H6'1 H6'2
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   H3  
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C5M  C6  
CONECT      C5M    4 C5   H71  H72  H73 
CONECT      C6     3 N1   C5   H6  
CONECT      HOP2   1 OP2 
CONECT      HOP3   1 OP3 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H6'1   1 C6' 
CONECT      H6'2   1 C6' 
CONECT      H3     1 N3  
CONECT      H71    1 C5M 
CONECT      H72    1 C5M 
CONECT      H73    1 C5M 
CONECT      H6     1 C6  
END   
HET    6HT             39
HETNAM     6HT 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(THYMIN-1-YL)-6'-O-PHOSP
HETNAM   2 6HT HORYL-D-ARABINO-HEXITOL
FORMUL      6HT    C11 H17 N2 O8 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science