Structure based on 1jq3 | Ideal structure |
|
Name: s-adenosyl-1,8-diamino-3-thiooctane |
Formula: C18 H29 N7 O3 S |
Weight: 423.533 |
SMILES: "NCCCCCC(SC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)=CCN" |
Spacial conformation based on PDB
1jq3. Also present on 2i7c |
RESIDUE AAT 58
CONECT N 3 CA HN1 HN2
CONECT CA 4 N CB HCA1 HCA2
CONECT CB 3 CA CG HCB
CONECT CG 3 CB SD C11
CONECT SD 2 CG C5'
CONECT C5' 4 SD C4' H5'1 H5'2
CONECT C4' 4 C5' O4' C3' H4'C
CONECT O4' 2 C4' C1'
CONECT C3' 4 C4' O3' C2' H3'C
CONECT O3' 2 C3' H3'O
CONECT C2' 4 C3' O2' C1' H2'C
CONECT O2' 2 C2' H2'O
CONECT C1' 4 O4' C2' N9 H1'C
CONECT N9 3 C1' C8 C4
CONECT C8 3 N9 N7 HC8
CONECT N7 2 C8 C5
CONECT C5 3 N7 C6 C4
CONECT C6 3 C5 N6 N1
CONECT N6 3 C6 HN61 HN62
CONECT N1 2 C6 C2
CONECT C2 3 N1 N3 HC2
CONECT N3 2 C2 C4
CONECT C4 3 N9 C5 N3
CONECT C11 4 CG C12 H111 H112
CONECT C12 4 C11 C13 H121 H122
CONECT C13 4 C12 C14 H131 H132
CONECT C14 4 C13 C15 H141 H142
CONECT C15 4 C14 N16 H151 H152
CONECT N16 3 C15 H161 H162
CONECT HN1 1 N
CONECT HN2 1 N
CONECT HCA1 1 CA
CONECT HCA2 1 CA
CONECT HCB 1 CB
CONECT H5'1 1 C5'
CONECT H5'2 1 C5'
CONECT H4'C 1 C4'
CONECT H3'C 1 C3'
CONECT H3'O 1 O3'
CONECT H2'C 1 C2'
CONECT H2'O 1 O2'
CONECT H1'C 1 C1'
CONECT HC8 1 C8
CONECT HN61 1 N6
CONECT HN62 1 N6
CONECT HC2 1 C2
CONECT H111 1 C11
CONECT H112 1 C11
CONECT H121 1 C12
CONECT H122 1 C12
CONECT H131 1 C13
CONECT H132 1 C13
CONECT H141 1 C14
CONECT H142 1 C14
CONECT H151 1 C15
CONECT H152 1 C15
CONECT H161 1 N16
CONECT H162 1 N16
END
HET AAT 58
HETNAM AAT S-ADENOSYL-1,8-DIAMINO-3-THIOOCTANE
FORMUL AAT C18 H29 N7 O3 S1