Structure based on 1dku

Ideal structure
Name: methyl phosphonic acid adenosine ester
Formula: C11 H16 N5 O6 P
Weight: 345.248
SMILES: "C[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"
Spacial conformation based on PDB 1dku.
Also present on 1ibs
RESIDUE   ABM     39
CONECT      P      4 CM   O2P  O3P  O5' 
CONECT      CM     4 P    HM1  HM2  HM3 
CONECT      O2P    1 P   
CONECT      O3P    2 P    HOP3
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  O2'  C1'  H2' 
CONECT      O2'    2 C2'  HO2'
CONECT      C1'    4 O4'  C2'  N9   H1' 
CONECT      N9     3 C1'  C8   C4  
CONECT      C8     3 N9   N7   H8  
CONECT      N7     2 C8   C5  
CONECT      C5     3 N7   C6   C4  
CONECT      C6     3 C5   N6   N1  
CONECT      N6     3 C6   HN61 HN62
CONECT      N1     2 C6   C2  
CONECT      C2     3 N1   N3   H2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N9   C5   N3  
CONECT      HM1    1 CM  
CONECT      HM2    1 CM  
CONECT      HM3    1 CM  
CONECT      HOP3   1 O3P 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      HO2'   1 O2' 
CONECT      H1'    1 C1' 
CONECT      H8     1 C8  
CONECT      HN61   1 N6  
CONECT      HN62   1 N6  
CONECT      H2     1 C2  
END   
HET    ABM             39
HETSYN     ABM ALPHA-METHYLENE ADENOSINE MONOPHOSPHATE
HETNAM     ABM METHYL PHOSPHONIC ACID ADENOSINE ESTER
FORMUL      ABM    C11 H16 N5 O6 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science