Structure based on 4p20

Ideal structure
Formula: C22 H43 N5 O13
Weight: 585.603
SMILES: "NCC[CH](O)C(=O)N[CH]1C[CH](N)[CH](O[CH]2O[CH](CN)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](N)[CH]3O"
Spacial conformation based on PDB 4p20.
Also present on 6cgd, 6vta, 6ypu
RESIDUE   AKN     83
CONECT      C1     4 C3   O2   O8   H1  
CONECT      C3     4 C1   C4   O32  H2  
CONECT      C4     4 C3   C5   O33  H3  
CONECT      C5     4 C4   C7   O6   H4  
CONECT      C7     4 C5   C9   O8   H5  
CONECT      C9     4 C7   N10  H6   H7  
CONECT      O6     2 C5   H8  
CONECT      O2     2 C1   C16 
CONECT      O8     2 C1   C7  
CONECT      N10    3 C9   H9   H10 
CONECT      C11    4 N12  C13  C19  H12 
CONECT      N12    3 C11  C35  H13 
CONECT      C13    4 C11  C14  H14  H15 
CONECT      C14    4 C13  N15  C16  H16 
CONECT      N15    3 C14  H17  H18 
CONECT      C16    4 O2   C14  C17  H20 
CONECT      C17    4 C16  O18  C19  H21 
CONECT      O18    2 C17  H22 
CONECT      C19    4 C11  C17  O20  H23 
CONECT      O20    2 C19  C21 
CONECT      C21    4 O20  C22  O29  H24 
CONECT      C22    4 C21  O23  C24  H25 
CONECT      O23    2 C22  H26 
CONECT      C24    4 C22  N25  C26  H27 
CONECT      N25    3 C24  H28  H29 
CONECT      C26    4 C24  O27  C28  H31 
CONECT      O27    2 C26  H32 
CONECT      C28    4 C26  O29  C30  H33 
CONECT      O29    2 C21  C28 
CONECT      C30    4 C28  O31  H34  H35 
CONECT      O31    2 C30  H36 
CONECT      O32    2 C3   H37 
CONECT      O33    2 C4   H38 
CONECT      N37    3 C39  H39  H40 
CONECT      C35    3 N12  O36  C37 
CONECT      O36    1 C35 
CONECT      C37    4 C35  C38  O40  H42 
CONECT      C38    4 C37  C39  H43  H44 
CONECT      C39    4 N37  C38  H45  H46 
CONECT      O40    2 C37  H47 
CONECT      H1     1 C1  
CONECT      H2     1 C3  
CONECT      H3     1 C4  
CONECT      H4     1 C5  
CONECT      H5     1 C7  
CONECT      H6     1 C9  
CONECT      H7     1 C9  
CONECT      H8     1 O6  
CONECT      H9     1 N10 
CONECT      H10    1 N10 
CONECT      H12    1 C11 
CONECT      H13    1 N12 
CONECT      H14    1 C13 
CONECT      H15    1 C13 
CONECT      H16    1 C14 
CONECT      H17    1 N15 
CONECT      H18    1 N15 
CONECT      H20    1 C16 
CONECT      H21    1 C17 
CONECT      H22    1 O18 
CONECT      H23    1 C19 
CONECT      H24    1 C21 
CONECT      H25    1 C22 
CONECT      H26    1 O23 
CONECT      H27    1 C24 
CONECT      H28    1 N25 
CONECT      H29    1 N25 
CONECT      H31    1 C26 
CONECT      H32    1 O27 
CONECT      H33    1 C28 
CONECT      H34    1 C30 
CONECT      H35    1 C30 
CONECT      H36    1 O31 
CONECT      H37    1 O32 
CONECT      H38    1 O33 
CONECT      H39    1 N37 
CONECT      H40    1 N37 
CONECT      H42    1 C37 
CONECT      H43    1 C38 
CONECT      H44    1 C38 
CONECT      H45    1 C39 
CONECT      H46    1 C39 
CONECT      H47    1 O40 
END   
HET    AKN             83
HETSYN     AKN AMIKACIN
HETNAM     AKN (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminome
HETNAM   2 AKN thyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S
HETNAM   3 AKN ,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxida
HETNAM   4 AKN nyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxi
HETNAM   5 AKN danyl-butanamide
FORMUL      AKN    C22 H43 N5 O13

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science