Structure based on 1yrj

Ideal structure
Name: apramycin
Formula: C21 H41 N5 O11
Weight: 539.577
SMILES: "CN[CH]1[CH](O)[CH]2O[CH](O[CH]3[CH](N)C[CH](N)[CH](O)[CH]3O)[CH](N)C[CH]2O[CH]1O[CH]4O[CH](CO)[CH](N)[CH](O)[CH]4O"
Spacial conformation based on PDB 1yrj.
Also present in other 11 PDB entries.
RESIDUE   AM2     78
CONECT      CA1    4 CA2  OA4  OA1  HA1 
CONECT      CA2    4 CA1  CA3  NA2  HA2 
CONECT      CA3    4 CA2  CA4  HA31 HA32
CONECT      CA4    4 CA3  CA5  OA5  HA4 
CONECT      CA5    4 CA4  CA6  OA4  HA5 
CONECT      CA6    4 CA5  CA7  OA6  HA6 
CONECT      CA7    4 CA6  CA8  NA7  HA7 
CONECT      CA8    4 CA7  OA5  OA8  HA8 
CONECT      CA9    4 NA7  HA91 HA92 HA93
CONECT      OA4    2 CA1  CA5 
CONECT      OA5    2 CA4  CA8 
CONECT      NA2    3 CA2  HA21 HA22
CONECT      NA7    3 CA7  CA9  H2  
CONECT      OA6    2 CA6  H1  
CONECT      OA8    2 CA8  CB1 
CONECT      OA1    2 CA1  CC1 
CONECT      CB1    4 OA8  CB2  OB1  HB1 
CONECT      CB2    4 CB1  CB3  OB2  HB2 
CONECT      CB3    4 CB2  CB4  OB3  HB3 
CONECT      CB4    4 CB3  CB5  NB4  HB4 
CONECT      CB5    4 CB4  CB6  OB1  HB5 
CONECT      CB6    4 CB5  OB6  HB61 HB62
CONECT      OB1    2 CB1  CB5 
CONECT      NB4    3 CB4  HB41 HB42
CONECT      OB2    2 CB2  H5  
CONECT      OB3    2 CB3  H6  
CONECT      OB6    2 CB6  HB6 
CONECT      CC1    4 OA1  CC2  CC6  HC1 
CONECT      CC2    4 CC1  CC3  OC2  HC2 
CONECT      CC3    4 CC2  CC4  OC3  HC3 
CONECT      CC4    4 CC3  CC5  NC4  HC4 
CONECT      CC5    4 CC4  CC6  HC51 HC52
CONECT      CC6    4 CC1  CC5  NC6  HC6 
CONECT      NC4    3 CC4  HC41 HC42
CONECT      NC6    3 CC6  HC61 HC62
CONECT      OC2    2 CC2  H3  
CONECT      OC3    2 CC3  H4  
CONECT      HA1    1 CA1 
CONECT      HA2    1 CA2 
CONECT      HA31   1 CA3 
CONECT      HA32   1 CA3 
CONECT      HA4    1 CA4 
CONECT      HA5    1 CA5 
CONECT      HA6    1 CA6 
CONECT      HA7    1 CA7 
CONECT      HA8    1 CA8 
CONECT      HA91   1 CA9 
CONECT      HA92   1 CA9 
CONECT      HA93   1 CA9 
CONECT      HA21   1 NA2 
CONECT      HA22   1 NA2 
CONECT      H2     1 NA7 
CONECT      H1     1 OA6 
CONECT      HB1    1 CB1 
CONECT      HB2    1 CB2 
CONECT      HB3    1 CB3 
CONECT      HB4    1 CB4 
CONECT      HB5    1 CB5 
CONECT      HB61   1 CB6 
CONECT      HB62   1 CB6 
CONECT      HB41   1 NB4 
CONECT      HB42   1 NB4 
CONECT      H5     1 OB2 
CONECT      H6     1 OB3 
CONECT      HB6    1 OB6 
CONECT      HC1    1 CC1 
CONECT      HC2    1 CC2 
CONECT      HC3    1 CC3 
CONECT      HC4    1 CC4 
CONECT      HC51   1 CC5 
CONECT      HC52   1 CC5 
CONECT      HC6    1 CC6 
CONECT      HC41   1 NC4 
CONECT      HC42   1 NC4 
CONECT      HC61   1 NC6 
CONECT      HC62   1 NC6 
CONECT      H3     1 OC2 
CONECT      H4     1 OC3 
END   
HET    AM2             78
HETSYN     AM2 NEBRAMYCIN II; 4-O-(3ALPHA-AMINO-6ALPHA-((4-AMINO-4-DEO
HETSYN   2 AM2 XY-ALPHA-D-GLUCOPYRANOSYL)OXY)-2,3,4,5ABETA,6,7,8,8AALP
HETSYN   3 AM2 HA-OCTAHYDRO-8BETA-HYDROXY-7BETA-(METHYLAMINO)PYRANO(3,
HETSYN   4 AM2 2-B)PYRAN-2ALPHA-YL)-2-DEOXY-D-STREPTAMINE
HETNAM     AM2 APRAMYCIN
FORMUL      AM2    C21 H41 N5 O11

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science