Structure based on 1qmg

Ideal structure
Name: 2'-monophosphoadenosine-5'-diphosphoribose
Formula: C15 H29 N5 O17 P3
Weight: 644.335
SMILES: "N[CH]1NC[NH2+]c2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O[P](O)(O)=O"
Spacial conformation based on PDB 1qmg
RESIDUE   APX     69
CONECT      PM     4 O6M  O7M  O3N  O5M 
CONECT      O6M    1 PM  
CONECT      O7M    2 PM   HOM7
CONECT      O3N    2 PM   PA  
CONECT      O5M    2 PM   C5M 
CONECT      C5M    4 O5M  C4M  H5M2 H5M1
CONECT      C4M    4 C5M  O4M  C3M  H4M 
CONECT      O4M    2 C4M  C1M 
CONECT      C3M    4 C4M  O3M  C2M  H3M 
CONECT      O3M    2 C3M  H3O1
CONECT      C2M    4 C3M  O2M  C1M  H2M 
CONECT      O2M    2 C2M  H2O1
CONECT      C1M    4 O4M  C2M  O1N  H1M 
CONECT      O1N    2 C1M  H1N 
CONECT      PA     4 O3N  O6B  O7B  O5B 
CONECT      O6B    1 PA  
CONECT      O7B    2 PA   HOB7
CONECT      O5B    2 PA   C5B 
CONECT      C5B    4 O5B  C4B  H5B2 H5B1
CONECT      C4B    4 C5B  O4B  C3B  H4B 
CONECT      O4B    2 C4B  C1B 
CONECT      C3B    4 C4B  O3B  C2B  H3B 
CONECT      O3B    2 C3B  H3O2
CONECT      C2B    4 C3B  O2B  C1B  H2B 
CONECT      O2B    2 C2B  P2  
CONECT      C1B    4 O4B  C2B  N9A  H1B 
CONECT      N9A    3 C1B  C4A  C8A 
CONECT      C4A    3 N9A  N3A  C5A 
CONECT      N3A    4 C4A  C2A  H3A  HN3A
CONECT      C2A    4 N3A  N1A  HC2A H2A 
CONECT      N1A    3 C2A  C6A  H1A 
CONECT      C6A    4 N1A  C5A  N6A  HC6A
CONECT      C5A    3 C4A  C6A  N7A 
CONECT      N7A    2 C5A  C8A 
CONECT      C8A    3 N9A  N7A  H8A 
CONECT      N6A    3 C6A  H6A2 H6A1
CONECT      P2     4 O2B  OP1  OP2  OP3 
CONECT      OP1    1 P2  
CONECT      OP2    2 P2   HOP2
CONECT      OP3    2 P2   HOP3
CONECT      HC2A   1 C2A 
CONECT      HOM7   1 O7M 
CONECT      H5M2   1 C5M 
CONECT      H5M1   1 C5M 
CONECT      H4M    1 C4M 
CONECT      H3M    1 C3M 
CONECT      H3O1   1 O3M 
CONECT      H2M    1 C2M 
CONECT      H2O1   1 O2M 
CONECT      H1M    1 C1M 
CONECT      H1N    1 O1N 
CONECT      HOB7   1 O7B 
CONECT      H5B2   1 C5B 
CONECT      H5B1   1 C5B 
CONECT      H4B    1 C4B 
CONECT      H3B    1 C3B 
CONECT      H3O2   1 O3B 
CONECT      H2B    1 C2B 
CONECT      H1B    1 C1B 
CONECT      H3A    1 N3A 
CONECT      HN3A   1 N3A 
CONECT      H2A    1 C2A 
CONECT      H1A    1 N1A 
CONECT      HC6A   1 C6A 
CONECT      H8A    1 C8A 
CONECT      H6A2   1 N6A 
CONECT      H6A1   1 N6A 
CONECT      HOP2   1 OP2 
CONECT      HOP3   1 OP3 
END   
HET    APX             69
HETNAM     APX 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE
FORMUL      APX    C15 H29 N5 O17 P3 1+

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science