Structure based on 1p5z

Ideal structure
Name: cytarabine
Formula: C9 H13 N3 O5
Weight: 243.217
SMILES: "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH]2O"
Spacial conformation based on PDB 1p5z.
Also present on 5y9a
RESIDUE   AR3     30
CONECT      O5'    2 C5'  H5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 O4'  N1   C2'  H1' 
CONECT      N1     3 C1'  C6   C2  
CONECT      C6     3 N1   C5   H6  
CONECT      C5     3 C6   C4   H5  
CONECT      C4     3 C5   N3   N4  
CONECT      N3     2 C4   C2  
CONECT      C2     3 N1   N3   O2  
CONECT      O2     1 C2  
CONECT      N4     3 C4   HN41 HN42
CONECT      C2'    4 C1'  O1   C3'  H2' 
CONECT      O1     2 C2'  HO1 
CONECT      C3'    4 C4'  C2'  O3'  H3' 
CONECT      O3'    2 C3'  H1  
CONECT      H5'    1 O5' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H6     1 C6  
CONECT      H5     1 C5  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      H2'    1 C2' 
CONECT      HO1    1 O1  
CONECT      H3'    1 C3' 
CONECT      H1     1 O3' 
END   
HET    AR3             30
HETSYN     AR3 1-BETA-D-ARABINOFURANOSYLCYTOSINE; ARA-C
HETNAM     AR3 CYTARABINE
FORMUL      AR3    C9 H13 N3 O5

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science