Structure based on 1gv6

Ideal structure
Name: [(1s,3r,4s,7r)-7-hydroxy-3-(thymin-1-yl)-2,5-dioxabicyclo[2.2.1]hept-1-yl]methyl dihydrogen phosphate
Formula: C11 H15 N2 O9 P
Weight: 350.219
SMILES: "CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)NC1=O"
Spacial conformation based on PDB 1gv6.
Also present on 1okf
RESIDUE   ATL     38
CONECT      OP1    1 P   
CONECT      P      4 OP1  OP2  O5'  OXT 
CONECT      OP2    2 P    HO2P
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  C6' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HA  
CONECT      C2'    4 C3'  O2'  C1'  H2' 
CONECT      O2'    2 C2'  C6' 
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      C6'    4 C4'  O2'  H9'1 H9'2
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   H3  
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C5M  C6  
CONECT      C5M    4 C5   H71  H72  H73 
CONECT      C6     3 N1   C5   H6  
CONECT      OXT    2 P    HXT 
CONECT      HO2P   1 OP2 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H3'    1 C3' 
CONECT      HA     1 O3' 
CONECT      H2'    1 C2' 
CONECT      H1'    1 C1' 
CONECT      H9'1   1 C6' 
CONECT      H9'2   1 C6' 
CONECT      H3     1 N3  
CONECT      H71    1 C5M 
CONECT      H72    1 C5M 
CONECT      H73    1 C5M 
CONECT      H6     1 C6  
CONECT      HXT    1 OXT 
END   
HET    ATL             38
HETNAM     ATL [(1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYC
HETNAM   2 ATL LO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE
FORMUL      ATL    C11 H15 N2 O9 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science