Structure based on 1gv6 | Ideal structure |
|
Name: [(1s,3r,4s,7r)-7-hydroxy-3-(thymin-1-yl)-2,5-dioxabicyclo[2.2.1]hept-1-yl]methyl dihydrogen phosphate |
Formula: C11 H15 N2 O9 P |
Weight: 350.219 |
SMILES: "CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)NC1=O" |
Spacial conformation based on PDB
1gv6. Also present on 1okf |
RESIDUE ATL 38
CONECT OP1 1 P
CONECT P 4 OP1 OP2 O5' OXT
CONECT OP2 2 P HO2P
CONECT O5' 2 P C5'
CONECT C5' 4 O5' C4' H5' H5''
CONECT C4' 4 C5' O4' C3' C6'
CONECT O4' 2 C4' C1'
CONECT C3' 4 C4' O3' C2' H3'
CONECT O3' 2 C3' HA
CONECT C2' 4 C3' O2' C1' H2'
CONECT O2' 2 C2' C6'
CONECT C1' 4 O4' C2' N1 H1'
CONECT C6' 4 C4' O2' H9'1 H9'2
CONECT N1 3 C1' C2 C6
CONECT C2 3 N1 O2 N3
CONECT O2 1 C2
CONECT N3 3 C2 C4 H3
CONECT C4 3 N3 O4 C5
CONECT O4 1 C4
CONECT C5 3 C4 C5M C6
CONECT C5M 4 C5 H71 H72 H73
CONECT C6 3 N1 C5 H6
CONECT OXT 2 P HXT
CONECT HO2P 1 OP2
CONECT H5' 1 C5'
CONECT H5'' 1 C5'
CONECT H3' 1 C3'
CONECT HA 1 O3'
CONECT H2' 1 C2'
CONECT H1' 1 C1'
CONECT H9'1 1 C6'
CONECT H9'2 1 C6'
CONECT H3 1 N3
CONECT H71 1 C5M
CONECT H72 1 C5M
CONECT H73 1 C5M
CONECT H6 1 C6
CONECT HXT 1 OXT
END
HET ATL 38
HETNAM ATL [(1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYC
HETNAM 2 ATL LO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE
FORMUL ATL C11 H15 N2 O9 P1