Structure based on 1lwx

Ideal structure
Name: 3'-azido-3'-deoxythymidine-5'-diphosphate
Formula: C10 H15 N5 O10 P2
Weight: 427.201
SMILES: "CC1=CN([CH]2C[CH](N=[N+]=[N-])[CH](CO[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"
Spacial conformation based on PDB 1lwx
RESIDUE   AZD     42
CONECT      PA     4 O1A  O2A  O3A  O5' 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   HOA2
CONECT      O3A    2 PA   PB  
CONECT      PB     4 O3A  O1B  O2B  O3B 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   HOB2
CONECT      O3B    2 PB   HOB3
CONECT      O5'    2 PA   C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  N3'  C2'  H3' 
CONECT      N3'    2 C3'  N4' 
CONECT      N4'    2 N3'  N5' 
CONECT      N5'    1 N4' 
CONECT      C2'    4 C3'  C1'  H2'1 H2'2
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C5A  C6  
CONECT      C5A    4 C5   H51  H52  H53 
CONECT      C6     3 N1   C5   H6  
CONECT      HOA2   1 O2A 
CONECT      HOB2   1 O2B 
CONECT      HOB3   1 O3B 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H1'    1 C1' 
CONECT      HN3    1 N3  
CONECT      H51    1 C5A 
CONECT      H52    1 C5A 
CONECT      H53    1 C5A 
CONECT      H6     1 C6  
END   
HET    AZD             42
HETNAM     AZD 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-DIPHOSPHATE
FORMUL      AZD    C10 H15 N5 O10 P2

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science