Structure based on 447d

Ideal structure
Name: 2'-(4-dimethylaminophenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bi-benzimidazole
Formula: C27 H29 N7
Weight: 451.566
SMILES: "CN1CCN(CC1)c2ccc3[nH]c(nc3c2)c4ccc5[nH]c(nc5c4)c6ccc(cc6)N(C)C"
Spacial conformation based on PDB 447d.
Also present on 1qv8
RESIDUE   BBZ     63
CONECT      C      3 C2   C4   N   
CONECT      C1     3 C3   C5   C6  
CONECT      C2     3 C    C3   H2  
CONECT      C3     3 C1   C2   H3  
CONECT      C4     3 C    C5   H4  
CONECT      C5     3 C1   C4   H5  
CONECT      N      3 C    CN1  CN2 
CONECT      C6     3 C1   N1   N2  
CONECT      C7     3 C8   C12  N1  
CONECT      C8     3 C7   C9   N2  
CONECT      C9     3 C8   C10  H9  
CONECT      C10    3 C9   C11  H10 
CONECT      C11    3 C10  C12  C13 
CONECT      C12    3 C7   C11  H12 
CONECT      N1     2 C6   C7  
CONECT      N2     3 C6   C8   HN2 
CONECT      C13    3 C11  N3   N4  
CONECT      C14    3 C15  N3   C19 
CONECT      C15    3 C14  C16  N4  
CONECT      C16    3 C15  C17  H16 
CONECT      C17    3 C16  C18  H17 
CONECT      C18    3 C17  C19  N5  
CONECT      N3     2 C13  C14 
CONECT      N4     3 C13  C15  HN4 
CONECT      C19    3 C14  C18  H19 
CONECT      N5     3 C18  C20  C23 
CONECT      N6     3 C21  C22  C24 
CONECT      C20    4 N5   C21  H201 H202
CONECT      C21    4 N6   C20  H211 H212
CONECT      C22    4 N6   C23  H221 H222
CONECT      C23    4 N5   C22  H231 H232
CONECT      C24    4 N6   H241 H242 H243
CONECT      CN1    4 N    HN11 HN12 HN13
CONECT      CN2    4 N    HN21 HN22 HN23
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      H9     1 C9  
CONECT      H10    1 C10 
CONECT      H12    1 C12 
CONECT      HN2    1 N2  
CONECT      H16    1 C16 
CONECT      H17    1 C17 
CONECT      HN4    1 N4  
CONECT      H19    1 C19 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H221   1 C22 
CONECT      H222   1 C22 
CONECT      H231   1 C23 
CONECT      H232   1 C23 
CONECT      H241   1 C24 
CONECT      H242   1 C24 
CONECT      H243   1 C24 
CONECT      HN11   1 CN1 
CONECT      HN12   1 CN1 
CONECT      HN13   1 CN1 
CONECT      HN21   1 CN2 
CONECT      HN22   1 CN2 
CONECT      HN23   1 CN2 
END   
HET    BBZ             63
HETNAM     BBZ 2'-(4-DIMETHYLAMINOPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2
HETNAM   2 BBZ ,5'-BI-BENZIMIDAZOLE
FORMUL      BBZ    C27 H29 N7

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science