Structure based on 1eau

Ideal structure
Name: 2-[5-amino-6-oxo-2-(2-thienyl)-1,6-dihydropyrimidin-1-yl)-n-[3,3-difluoro -1-isopropyl-2-oxo-3-(n-(2-morpholino ethyl)carbamoyl]propyl]acetamide
Formula: C23 H30 F2 N6 O5 S
Weight: 540.583
SMILES: "CC(C)[CH](NC(=O)CN1C(=O)C(=CN=C1c2sccc2)N)C(=O)C(F)(F)C(=O)NCCN3CCOCC3"
Spacial conformation based on PDB 1eau
RESIDUE   BDK     67
CONECT      C1     4 C2   C17  F1   F2  
CONECT      C2     3 C1   C3   O1  
CONECT      C3     4 C2   C4   N1   H3  
CONECT      C4     4 C3   C5   C6   H4  
CONECT      C5     4 C4   H51  H52  H53 
CONECT      C6     4 C4   H61  H62  H63 
CONECT      C7     3 C8   N1   O2  
CONECT      C8     4 C7   N2   H81  H82 
CONECT      C9     3 C10  N2   O3  
CONECT      C10    3 C9   C11  N4  
CONECT      C11    3 C10  N3   H11 
CONECT      C12    3 C13  N2   N3  
CONECT      C13    3 C12  C14  S1  
CONECT      C14    3 C13  C15  H14 
CONECT      C15    3 C14  C16  H15 
CONECT      C16    3 C15  S1   H16 
CONECT      C17    3 C1   N5   O4  
CONECT      C18    4 C19  N5   H181 H182
CONECT      C19    4 C18  N6   H191 H192
CONECT      C20    4 C21  N6   H201 H202
CONECT      C21    4 C20  O5   H211 H212
CONECT      C22    4 C23  O5   H221 H222
CONECT      C23    4 C22  N6   H231 H232
CONECT      N1     3 C3   C7   HN1 
CONECT      N2     3 C8   C9   C12 
CONECT      N3     2 C11  C12 
CONECT      N4     3 C10  HN41 HN42
CONECT      N5     3 C17  C18  HN5 
CONECT      N6     3 C19  C20  C23 
CONECT      O1     1 C2  
CONECT      O2     1 C7  
CONECT      O3     1 C9  
CONECT      O4     1 C17 
CONECT      O5     2 C21  C22 
CONECT      F1     1 C1  
CONECT      F2     1 C1  
CONECT      S1     2 C13  C16 
CONECT      H3     1 C3  
CONECT      H4     1 C4  
CONECT      H51    1 C5  
CONECT      H52    1 C5  
CONECT      H53    1 C5  
CONECT      H61    1 C6  
CONECT      H62    1 C6  
CONECT      H63    1 C6  
CONECT      H81    1 C8  
CONECT      H82    1 C8  
CONECT      H11    1 C11 
CONECT      H14    1 C14 
CONECT      H15    1 C15 
CONECT      H16    1 C16 
CONECT      H181   1 C18 
CONECT      H182   1 C18 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H221   1 C22 
CONECT      H222   1 C22 
CONECT      H231   1 C23 
CONECT      H232   1 C23 
CONECT      HN1    1 N1  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      HN5    1 N5  
END   
HET    BDK             67
HETNAM     BDK 2-[5-AMINO-6-OXO-2-(2-THIENYL)-1,6-DIHYDROPYRIMIDIN-1-Y
HETNAM   2 BDK L)-N-[3,3-DIFLUORO -1-ISOPROPYL-2-OXO-3-(N-(2-MORPHOLIN
HETNAM   3 BDK O ETHYL)CARBAMOYL]PROPYL]ACETAMIDE
FORMUL      BDK    C23 H30 F2 N6 O5 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science