Structure based on 1jum

Ideal structure
Name: berberine
Formula: C20 H18 N O4
Weight: 336.361
SMILES: "COc1ccc2cc3c4cc5OCOc5cc4CC[n+]3cc2c1OC"
Spacial conformation based on PDB 1jum.
Also present in other 17 PDB entries.
RESIDUE   BER     43
CONECT      C1     3 C2   N1   C3  
CONECT      C2     3 C1   C4   C5  
CONECT      N1     3 C1   C6   C7  
CONECT      C3     3 C1   C8   H31 
CONECT      C4     3 C2   C9   C10 
CONECT      C5     3 C2   C11  H51 
CONECT      C6     3 N1   C12  H61 
CONECT      C7     4 N1   C10  H71  H72 
CONECT      C8     3 C3   C12  C13 
CONECT      C9     3 C4   C14  H91 
CONECT      C10    4 C4   C7   H101 H102
CONECT      C11    3 C5   C14  O1  
CONECT      C12    3 C6   C8   C15 
CONECT      C13    3 C8   C16  H131
CONECT      C14    3 C9   C11  O2  
CONECT      O1     2 C11  C17 
CONECT      C15    3 C12  C18  O3  
CONECT      C16    3 C13  C18  H161
CONECT      O2     2 C14  C17 
CONECT      C17    4 O1   O2   H171 H172
CONECT      C18    3 C15  C16  O4  
CONECT      O3     2 C15  C19 
CONECT      O4     2 C18  C20 
CONECT      C19    4 O3   H191 H192 H193
CONECT      C20    4 O4   H201 H202 H203
CONECT      H31    1 C3  
CONECT      H51    1 C5  
CONECT      H61    1 C6  
CONECT      H71    1 C7  
CONECT      H72    1 C7  
CONECT      H91    1 C9  
CONECT      H101   1 C10 
CONECT      H102   1 C10 
CONECT      H131   1 C13 
CONECT      H161   1 C16 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H193   1 C19 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H203   1 C20 
END   
HET    BER             43
HETNAM     BER BERBERINE
FORMUL      BER    C20 H18 N1 O4 1+

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science