Structure based on 1od9

Ideal structure
Name: me-a-n-benzoyl-amino-9-deoxy-neu5ac
Formula: C19 H26 N2 O9
Weight: 426.418
SMILES: "CO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CNC(=O)c2ccccc2)C(O)=O"
Spacial conformation based on PDB 1od9
RESIDUE   BND     56
CONECT      CY1    4 O2   HY11 HY12 HY13
CONECT      C1     3 O1A  O1B  C2  
CONECT      O1A    1 C1  
CONECT      O1B    2 C1   HO1B
CONECT      C2     4 C1   O2   C3   O6  
CONECT      O2     2 CY1  C2  
CONECT      C3     4 C2   C4   H32  H31 
CONECT      C4     4 C3   O4   C5   H4  
CONECT      O4     2 C4   HO4 
CONECT      C5     4 C4   N5   C6   H5  
CONECT      N5     3 C5   C10  HN5 
CONECT      C10    3 N5   O10  C11 
CONECT      O10    1 C10 
CONECT      C11    4 C10  H111 H113 H112
CONECT      C6     4 C5   O6   C7   H6  
CONECT      O6     2 C2   C6  
CONECT      C7     4 C6   O7   C8   H7  
CONECT      O7     2 C7   HO7 
CONECT      C8     4 C7   O8   C9   H8  
CONECT      O8     2 C8   HO8 
CONECT      C9     4 C8   NX6  H92  H91 
CONECT      NX6    3 C9   C12  HE  
CONECT      C12    3 NX6  O12  C1G 
CONECT      O12    1 C12 
CONECT      C1G    3 C12  CD1  CD2 
CONECT      CD1    3 C1G  CE1  HD1 
CONECT      CE1    3 CD1  C1Z  HE1 
CONECT      CD2    3 C1G  CE2  HD2 
CONECT      CE2    3 CD2  C1Z  HE2 
CONECT      C1Z    3 CE1  CE2  H1Z 
CONECT      HY11   1 CY1 
CONECT      HY12   1 CY1 
CONECT      HY13   1 CY1 
CONECT      HO1B   1 O1B 
CONECT      H32    1 C3  
CONECT      H31    1 C3  
CONECT      H4     1 C4  
CONECT      HO4    1 O4  
CONECT      H5     1 C5  
CONECT      HN5    1 N5  
CONECT      H111   1 C11 
CONECT      H113   1 C11 
CONECT      H112   1 C11 
CONECT      H6     1 C6  
CONECT      H7     1 C7  
CONECT      HO7    1 O7  
CONECT      H8     1 C8  
CONECT      HO8    1 O8  
CONECT      H92    1 C9  
CONECT      H91    1 C9  
CONECT      HE     1 NX6 
CONECT      HD1    1 CD1 
CONECT      HE1    1 CE1 
CONECT      HD2    1 CD2 
CONECT      HE2    1 CE2 
CONECT      H1Z    1 C1Z 
END   
HET    BND             56
HETSYN     BND ME-A-N-BENZOYL-AMINO-9-DEOXY-NEU5AC; methyl 5-acetamido
HETSYN   2 BND -3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alp
HETSYN   3 BND ha-D-galacto-non-2-ulosidonic acid; methyl 5-acetamido-
HETSYN   4 BND 3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-D-ga
HETSYN   5 BND lacto-non-2-ulosidonic acid; methyl 5-acetamido-3,5,9-t
HETSYN   6 BND rideoxy-9-[(phenylcarbonyl)amino]-D-glycero-galacto-non
HETSYN   7 BND -2-ulosidonic acid
HETNAM     BND methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)am
HETNAM   2 BND ino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic a
HETNAM   3 BND cid
FORMUL      BND    C19 H26 N2 O9

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science