Structure based on 1amd

Ideal structure
Name: bis-daunorubicin
Formula: C62 H66 N2 O20
Weight: 1159.189
Spacial conformation based on PDB 1amd
RESIDUE   BNR    150
CONECT      C1     3 C2   C20  H1  
CONECT      C2     3 C1   C3   H2  
CONECT      C3     3 C2   C4   H3  
CONECT      C4     3 C3   O4   C5  
CONECT      O4     2 C4   C21 
CONECT      C5     3 C4   C6   C20 
CONECT      C6     3 C5   O6   C7  
CONECT      O6     1 C6  
CONECT      C7     3 C6   C8   C18 
CONECT      C8     3 C7   O8   C9  
CONECT      O8     2 C8   HO8 
CONECT      C9     3 C8   C10  C16 
CONECT      C10    4 C9   O10  C11  H10 
CONECT      O10    2 C10  C1' 
CONECT      C11    4 C10  C12  H111 H112
CONECT      C12    4 C11  O12  C13  C15 
CONECT      O12    2 C12  H12 
CONECT      C13    3 C12  O13  C14 
CONECT      O13    1 C13 
CONECT      C14    4 C13  H141 H142 H143
CONECT      C15    4 C12  C16  H151 H152
CONECT      C16    3 C9   C15  C17 
CONECT      C17    3 C16  O17  C18 
CONECT      O17    2 C17  H17 
CONECT      C18    3 C7   C17  C19 
CONECT      C19    3 C18  O19  C20 
CONECT      O19    1 C19 
CONECT      C20    3 C1   C5   C19 
CONECT      C21    4 O4   H211 H212 H213
CONECT      C1'    4 O10  C2'  O5'  H1' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C4'    4 C3'  N4'  C5'  H4' 
CONECT      N4'    4 C4'  C7'  HN'1 HN'2
CONECT      C5'    4 C4'  O5'  C6'  H5' 
CONECT      O5'    2 C1'  C5' 
CONECT      C6'    4 C5'  H6'1 H6'2 H6'3
CONECT      C7'    4 N4'  C8'  H7'1 H7'2
CONECT      C8'    3 C7'  C9A  C9B 
CONECT      C1B    3 C2B  CK'  H1B 
CONECT      C2B    3 C1B  C3B  H2' 
CONECT      C3B    3 C2B  C4B  H3B 
CONECT      C4B    3 C3B  O4'  C5B 
CONECT      O4'    2 C4B  CL' 
CONECT      C5B    3 C4B  C6B  CK' 
CONECT      C6B    3 C5B  O6'  C7B 
CONECT      O6'    1 C6B 
CONECT      C7B    3 C6B  C8B  CI' 
CONECT      C8B    3 C7B  O8'  C9' 
CONECT      O8'    2 C8B  HO8'
CONECT      C9'    3 C8B  CA'  CG' 
CONECT      CA'    4 C9'  OA'  CB'  H10'
CONECT      OA'    2 CA'  C1D 
CONECT      CB'    4 CA'  CC'  HL'1 HL'2
CONECT      CC'    4 CB'  OC'  CD'  CF' 
CONECT      OC'    2 CC'  H12'
CONECT      CD'    3 CC'  OD'  CE' 
CONECT      OD'    1 CD' 
CONECT      CE'    4 CD'  HK'1 HK'2 HK'3
CONECT      CF'    4 CC'  CG'  HJ'1 HJ'2
CONECT      CG'    3 C9'  CF'  CH' 
CONECT      CH'    3 CG'  OH'  CI' 
CONECT      OH'    2 CH'  H17'
CONECT      CI'    3 C7B  CH'  CJ' 
CONECT      CJ'    3 CI'  OJ'  CK' 
CONECT      OJ'    1 CJ' 
CONECT      CK'    3 C1B  C5B  CJ' 
CONECT      CL'    4 O4'  HI'1 HI'2 HI'3
CONECT      C1D    4 OA'  C2D  O5D  H1D 
CONECT      C2D    4 C1D  C3D  H2B  H2D 
CONECT      C3D    4 C2D  O3D  C4D  H3D 
CONECT      O3D    2 C3D  HO3A
CONECT      C4D    4 C3D  N4D  C5D  H4D 
CONECT      N4D    4 C4D  C7D  HNB  HND 
CONECT      C5D    4 C4D  O5D  C6D  H5D 
CONECT      O5D    2 C1D  C5D 
CONECT      C6D    4 C5D  H6B  H6D  H6E 
CONECT      C7D    4 N4D  C8D  H7B  H7D 
CONECT      C8D    3 C7D  C1A  C1C 
CONECT      C9A    3 C8'  C1A  H9A 
CONECT      C9B    3 C8'  C1C  H9B 
CONECT      C1A    3 C8D  C9A  H9A'
CONECT      C1C    3 C8D  C9B  H9B'
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      HO8    1 O8  
CONECT      H10    1 C10 
CONECT      H111   1 C11 
CONECT      H112   1 C11 
CONECT      H12    1 O12 
CONECT      H141   1 C14 
CONECT      H142   1 C14 
CONECT      H143   1 C14 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      H17    1 O17 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H213   1 C21 
CONECT      H1'    1 C1' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H4'    1 C4' 
CONECT      HN'1   1 N4' 
CONECT      HN'2   1 N4' 
CONECT      H5'    1 C5' 
CONECT      H6'1   1 C6' 
CONECT      H6'2   1 C6' 
CONECT      H6'3   1 C6' 
CONECT      H7'1   1 C7' 
CONECT      H7'2   1 C7' 
CONECT      H1B    1 C1B 
CONECT      H2'    1 C2B 
CONECT      H3B    1 C3B 
CONECT      HO8'   1 O8' 
CONECT      H10'   1 CA' 
CONECT      HL'1   1 CB' 
CONECT      HL'2   1 CB' 
CONECT      H12'   1 OC' 
CONECT      HK'1   1 CE' 
CONECT      HK'2   1 CE' 
CONECT      HK'3   1 CE' 
CONECT      HJ'1   1 CF' 
CONECT      HJ'2   1 CF' 
CONECT      H17'   1 OH' 
CONECT      HI'1   1 CL' 
CONECT      HI'2   1 CL' 
CONECT      HI'3   1 CL' 
CONECT      H1D    1 C1D 
CONECT      H2B    1 C2D 
CONECT      H2D    1 C2D 
CONECT      H3D    1 C3D 
CONECT      HO3A   1 O3D 
CONECT      H4D    1 C4D 
CONECT      HNB    1 N4D 
CONECT      HND    1 N4D 
CONECT      H5D    1 C5D 
CONECT      H6B    1 C6D 
CONECT      H6D    1 C6D 
CONECT      H6E    1 C6D 
CONECT      H7B    1 C7D 
CONECT      H7D    1 C7D 
CONECT      H9A    1 C9A 
CONECT      H9B    1 C9B 
CONECT      H9A'   1 C1A 
CONECT      H9B'   1 C1C 
END   
HET    BNR            150
HETSYN     BNR WP652
HETNAM     BNR BIS-DAUNORUBICIN
FORMUL      BNR    C62 H66 N2 O20 2+

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Bioinformatics Unit
Weizmann Institute of Science