Structure based on 1ki4

Ideal structure
Name: 5-bromothienyldeoxyuridine
Formula: C13 H13 Br N2 O5 S
Weight: 389.222
SMILES: "OC[CH]1O[CH](C[CH]1O)N2C=C(C(=O)NC2=O)c3sc(Br)cc3"
Spacial conformation based on PDB 1ki4
RESIDUE   BTD     35
CONECT      O5'    2 C5'  HO5'
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 O4'  N1   C2'  H1' 
CONECT      N1     3 C1'  C6   C2  
CONECT      C6     3 N1   C5   H6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C6   C4   C55 
CONECT      C55    3 C5   C44  S11 
CONECT      C44    3 C55  C33  H44 
CONECT      C33    3 C44  C22  H33 
CONECT      C22    3 C33  S11  BR  
CONECT      S11    2 C55  C22 
CONECT      BR     1 C22 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C3'    4 C4'  C2'  O3'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      HO5'   1 O5' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H6     1 C6  
CONECT      HN3    1 N3  
CONECT      H44    1 C44 
CONECT      H33    1 C33 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
END   
HET    BTD             35
HETNAM     BTD 5-BROMOTHIENYLDEOXYURIDINE
FORMUL      BTD    C13 H13 Br1 N2 O5 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science