Structure based on 1rd9

Ideal structure
Name: 1,3-bis-([3-(4-{3-[3-nitro-5-(galactopyranosyloxy)-benzoylamino]-propyl}-piperazin-1-yl)-propyl-amino]-carbonyloxy)-2-amino-propane
Formula: C51 H79 N11 O22
Weight: 1198.233
SMILES: "NC(COC(=O)NCCCN1CCN(CCCNC(=O)c2cc(O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)cc(c2)[N+]([O-])=O)CC1)COC(=O)NCCCN4CCN(CCCNC(=O)c5cc(OC6OC(CO)C(O)C(O)C6O)cc(c5)[N+]([O-])=O)CC4"
Spacial conformation based on PDB 1rd9
RESIDUE   BV2    163
CONECT      O20    2 C48  H20 
CONECT      C48    4 O20  C47  C49  H48 
CONECT      C47    4 C48  O19  C46  H47 
CONECT      O19    2 C47  H19 
CONECT      C46    4 C47  O18  C50  H46 
CONECT      O18    2 C46  H18 
CONECT      C50    4 C46  C51  O21  H50 
CONECT      C51    4 C50  O22  H511 H512
CONECT      O22    2 C51  H22 
CONECT      O21    2 C50  C49 
CONECT      C49    4 C48  O21  O15  H49 
CONECT      O15    2 C49  C44 
CONECT      C44    3 O15  C45  C43 
CONECT      C45    3 C44  C40  H45 
CONECT      C43    3 C44  C42  H43 
CONECT      C42    3 C43  N11  C41 
CONECT      N11    3 C42  O17  O16 
CONECT      O17    1 N11 
CONECT      O16    1 N11 
CONECT      C41    3 C42  C40  H41 
CONECT      C40    3 C45  C41  C39 
CONECT      C39    3 C40  O14  N10 
CONECT      O14    1 C39 
CONECT      N10    3 C39  C35  H10 
CONECT      O1     2 C1   HO1 
CONECT      C1     4 O1   C2   H11A H12A
CONECT      C2     4 C1   O2   C38  H2  
CONECT      O2     2 C2   C3  
CONECT      C3     4 O2   O3   C36  H3  
CONECT      O3     2 C3   C4  
CONECT      C4     3 O3   C5   C9  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 C5   C7   C10 
CONECT      C7     3 C6   C8   H7  
CONECT      C8     3 C7   C9   N1  
CONECT      C9     3 C4   C8   H9  
CONECT      N1     3 C8   O4   O5  
CONECT      O4     1 N1  
CONECT      O5     1 N1  
CONECT      C10    3 C6   O6   N2  
CONECT      O6     1 C10 
CONECT      N2     3 C10  C11  HN2 
CONECT      C11    4 N2   C12  H111 H112
CONECT      C12    4 C11  C13  H121 H122
CONECT      C13    4 C12  N3   H131 H132
CONECT      N3     3 C13  C14  C17 
CONECT      C14    4 N3   C15  H141 H142
CONECT      C15    4 C14  N4   H151 H152
CONECT      N4     3 C15  C16  C18 
CONECT      C16    4 N4   C17  H161 H162
CONECT      C17    4 N3   C16  H171 H172
CONECT      C18    4 N4   C19  H181 H182
CONECT      C19    4 C18  C20  H191 H192
CONECT      C20    4 C19  N5   H201 H202
CONECT      N5     3 C20  C21  HN5 
CONECT      C21    3 N5   O7   O8  
CONECT      O7     1 C21 
CONECT      O8     2 C21  C22 
CONECT      C22    4 O8   C23  H221 H222
CONECT      C23    4 C22  N6   C24  H23 
CONECT      N6     3 C23  HN61 HN62
CONECT      C24    4 C23  O9   H241 H242
CONECT      O9     2 C24  C25 
CONECT      C25    3 O9   O10  N7  
CONECT      O10    1 C25 
CONECT      N7     3 C25  C26  HN7 
CONECT      C26    4 N7   C27  H261 H262
CONECT      C27    4 C26  C28  H271 H272
CONECT      C28    4 C27  N8   H281 H282
CONECT      N8     3 C28  C29  C32 
CONECT      C29    4 N8   C30  H291 H292
CONECT      C30    4 C29  N9   H301 H302
CONECT      N9     3 C30  C31  C33 
CONECT      C31    4 N9   C32  H311 H312
CONECT      C32    4 N8   C31  H321 H322
CONECT      C33    4 N9   C34  H331 H332
CONECT      C34    4 C33  C35  H341 H342
CONECT      C35    4 N10  C34  H351 H352
CONECT      C36    4 C3   O11  C37  H36 
CONECT      O11    2 C36  H11 
CONECT      C37    4 C36  O12  C38  H37 
CONECT      O12    2 C37  H12 
CONECT      C38    4 C2   C37  O13  H38 
CONECT      O13    2 C38  H13 
CONECT      H20    1 O20 
CONECT      H48    1 C48 
CONECT      H47    1 C47 
CONECT      H19    1 O19 
CONECT      H46    1 C46 
CONECT      H18    1 O18 
CONECT      H50    1 C50 
CONECT      H511   1 C51 
CONECT      H512   1 C51 
CONECT      H22    1 O22 
CONECT      H49    1 C49 
CONECT      H45    1 C45 
CONECT      H43    1 C43 
CONECT      H41    1 C41 
CONECT      H10    1 N10 
CONECT      HO1    1 O1  
CONECT      H11A   1 C1  
CONECT      H12A   1 C1  
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H5     1 C5  
CONECT      H7     1 C7  
CONECT      H9     1 C9  
CONECT      HN2    1 N2  
CONECT      H111   1 C11 
CONECT      H112   1 C11 
CONECT      H121   1 C12 
CONECT      H122   1 C12 
CONECT      H131   1 C13 
CONECT      H132   1 C13 
CONECT      H141   1 C14 
CONECT      H142   1 C14 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      H161   1 C16 
CONECT      H162   1 C16 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H181   1 C18 
CONECT      H182   1 C18 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      HN5    1 N5  
CONECT      H221   1 C22 
CONECT      H222   1 C22 
CONECT      H23    1 C23 
CONECT      HN61   1 N6  
CONECT      HN62   1 N6  
CONECT      H241   1 C24 
CONECT      H242   1 C24 
CONECT      HN7    1 N7  
CONECT      H261   1 C26 
CONECT      H262   1 C26 
CONECT      H271   1 C27 
CONECT      H272   1 C27 
CONECT      H281   1 C28 
CONECT      H282   1 C28 
CONECT      H291   1 C29 
CONECT      H292   1 C29 
CONECT      H301   1 C30 
CONECT      H302   1 C30 
CONECT      H311   1 C31 
CONECT      H312   1 C31 
CONECT      H321   1 C32 
CONECT      H322   1 C32 
CONECT      H331   1 C33 
CONECT      H332   1 C33 
CONECT      H341   1 C34 
CONECT      H342   1 C34 
CONECT      H351   1 C35 
CONECT      H352   1 C35 
CONECT      H36    1 C36 
CONECT      H11    1 O11 
CONECT      H37    1 C37 
CONECT      H12    1 O12 
CONECT      H38    1 C38 
CONECT      H13    1 O13 
END   
HET    BV2            163
HETSYN     BV2 BV2
HETNAM     BV2 1,3-BIS-([3-(4-{3-[3-NITRO-5-(GALACTOPYRANOSYLOXY)-BENZ
HETNAM   2 BV2 OYLAMINO]-PROPYL}-PIPERAZIN-1-YL)-PROPYL-AMINO]-CARBONY
HETNAM   3 BV2 LOXY)-2-AMINO-PROPANE
FORMUL      BV2    C51 H79 N11 O22

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science