Structure based on 1n1d

Ideal structure
Name: [cytidine-5'-phosphate] glycerylphosphoric acid ester
Formula: C12 H21 N3 O13 P2
Weight: 477.255
SMILES: "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH](O)CO)[CH](O)[CH]2O"
Spacial conformation based on PDB 1n1d.
Also present on 3l7k, 3l7l, 4q7c
RESIDUE   C2G     51
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   N3   O2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N4  
CONECT      C5     3 C4   C6   HC5 
CONECT      C6     3 N1   C5   HC6 
CONECT      O2     1 C2  
CONECT      N4     3 C4   HN41 HN42
CONECT      C1'    4 N1   C2'  O4'  HC1 
CONECT      C2'    4 C1'  O2'  C3'  HC2 
CONECT      O2'    2 C2'  HO2 
CONECT      C3'    4 C2'  C4'  O3'  HC3 
CONECT      C4'    4 C3'  O4'  C5'  HC4 
CONECT      O4'    2 C1'  C4' 
CONECT      O3'    2 C3'  HO3 
CONECT      C5'    4 C4'  O5'  HC51 HC52
CONECT      O5'    2 C5'  PA  
CONECT      PA     4 O5'  O1A  O2A  O3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   H2A 
CONECT      O3A    2 PA   PB  
CONECT      PB     4 O3A  O1B  O2B  O3B 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   H2B 
CONECT      O3B    2 PB   C3G 
CONECT      O1G    2 C1G  H1G 
CONECT      C1G    4 O1G  C2G  H1G1 H1G2
CONECT      C2G    4 C1G  O2G  C3G  H2G 
CONECT      O2G    2 C2G  HOG 
CONECT      C3G    4 O3B  C2G  H3G1 H3G2
CONECT      HC5    1 C5  
CONECT      HC6    1 C6  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      HC1    1 C1' 
CONECT      HC2    1 C2' 
CONECT      HO2    1 O2' 
CONECT      HC3    1 C3' 
CONECT      HC4    1 C4' 
CONECT      HO3    1 O3' 
CONECT      HC51   1 C5' 
CONECT      HC52   1 C5' 
CONECT      H2A    1 O2A 
CONECT      H2B    1 O2B 
CONECT      H1G    1 O1G 
CONECT      H1G1   1 C1G 
CONECT      H1G2   1 C1G 
CONECT      H2G    1 C2G 
CONECT      HOG    1 O2G 
CONECT      H3G1   1 C3G 
CONECT      H3G2   1 C3G 
END   
HET    C2G             51
HETSYN     C2G CYTIDINE 5'-DIPHOSPHOGLYCEROL
HETNAM     C2G [CYTIDINE-5'-PHOSPHATE] GLYCERYLPHOSPHORIC ACID ESTER
FORMUL      C2G    C12 H21 N3 O13 P2

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science