Structure based on 1d9d

Ideal structure
Name: 2'-o-3-aminopropyl cytidine-5'-monophosphate
Formula: C12 H21 N4 O8 P
Weight: 380.291
SMILES: "NCCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N"
Spacial conformation based on PDB 1d9d
RESIDUE   C31     46
CONECT      P      4 O1P  O2P  O3P  O5' 
CONECT      O1P    2 P    H1P 
CONECT      O2P    1 P   
CONECT      O3P    2 P    H3P 
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HA  
CONECT      C2'    4 C3'  O2'  C1'  H2' 
CONECT      O2'    2 C2'  CA' 
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   H4N1 H4N2
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      CA'    4 O2'  CB'  HA'1 HA'2
CONECT      CB'    4 CA'  CC   HB'1 HB'2
CONECT      CC     4 CB'  ND'  HCC1 HCC2
CONECT      ND'    3 CC   HD'1 HD'2
CONECT      H1P    1 O1P 
CONECT      H3P    1 O3P 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HA     1 O3' 
CONECT      H2'    1 C2' 
CONECT      H1'    1 C1' 
CONECT      H4N1   1 N4  
CONECT      H4N2   1 N4  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      HA'1   1 CA' 
CONECT      HA'2   1 CA' 
CONECT      HB'1   1 CB' 
CONECT      HB'2   1 CB' 
CONECT      HCC1   1 CC  
CONECT      HCC2   1 CC  
CONECT      HD'1   1 ND' 
CONECT      HD'2   1 ND' 
END   
HET    C31             46
HETNAM     C31 2'-O-3-AMINOPROPYL CYTIDINE-5'-MONOPHOSPHATE
FORMUL      C31    C12 H21 N4 O8 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science