Structure based on 1jy8

Ideal structure
Name: 2c-methyl-d-erythritol 2,4-cyclodiphosphate
Formula: C5 H12 O9 P2
Weight: 278.091
SMILES: "C[C]1(CO)O[P](O)(=O)O[P](O)(=O)OC[CH]1O"
Spacial conformation based on PDB 1jy8.
Also present on 1h48, 1knj, 4g9p, 4s38
RESIDUE   CDI     28
CONECT      C4     4 C3   O2   HC41 HC42
CONECT      C3     4 C4   OB4  C2   C5  
CONECT      OB4    2 C3   PB  
CONECT      PB     4 OB4  OB2  OB3  OB1 
CONECT      OB2    2 PB   HB2O
CONECT      OB3    1 PB  
CONECT      PA     4 OA3  OA1  OA2  OB1 
CONECT      OA3    2 PA   C1  
CONECT      OA1    2 PA   HA1O
CONECT      OA2    1 PA  
CONECT      C1     4 OA3  C2   HC11 HC12
CONECT      C2     4 C3   C1   O1   HC2 
CONECT      O1     2 C2   HO1 
CONECT      C5     4 C3   HC51 HC52 HC53
CONECT      O2     2 C4   HO2 
CONECT      OB1    2 PB   PA  
CONECT      HC41   1 C4  
CONECT      HC42   1 C4  
CONECT      HB2O   1 OB2 
CONECT      HA1O   1 OA1 
CONECT      HC11   1 C1  
CONECT      HC12   1 C1  
CONECT      HC2    1 C2  
CONECT      HO1    1 O1  
CONECT      HC51   1 C5  
CONECT      HC52   1 C5  
CONECT      HC53   1 C5  
CONECT      HO2    1 O2  
END   
HET    CDI             28
HETNAM     CDI 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE
FORMUL      CDI    C5 H12 O9 P2

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science