Structure based on 1ini

Ideal structure
Name: 4-diphosphocytidyl-2-c-methyl-d-erythritol
Formula: C14 H25 N3 O14 P2
Weight: 521.308
SMILES: "C[C](O)(CO)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N"
Spacial conformation based on PDB 1ini.
Also present in other 5 PDB entries.
RESIDUE   CDM     58
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   N3   O2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      O2     1 C2  
CONECT      N4     3 C4   H41  H42 
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  HO'2
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      O3'    2 C3'  H3T 
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  PA  
CONECT      PA     4 O5'  O1A  O2A  O3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   HO2A
CONECT      O3A    2 PA   PB  
CONECT      PB     4 O3A  O1B  O2B  O3B 
CONECT      O1B    2 PB   HO1B
CONECT      O2B    1 PB  
CONECT      O3B    2 PB   C1M 
CONECT      C1M    4 O3B  C2M  H1M1 H1M2
CONECT      C2M    4 C1M  O2M  C3M  H2M1
CONECT      O2M    2 C2M  H2M2
CONECT      C3M    4 C2M  C4M  C5M  O3M 
CONECT      C4M    4 C3M  O4M  H4M1 H4M2
CONECT      C5M    4 C3M  H5M1 H5M2 H5M3
CONECT      O3M    2 C3M  H3M 
CONECT      O4M    2 C4M  H4M 
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H41    1 N4  
CONECT      H42    1 N4  
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      HO'2   1 O2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      H3T    1 O3' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      HO2A   1 O2A 
CONECT      HO1B   1 O1B 
CONECT      H1M1   1 C1M 
CONECT      H1M2   1 C1M 
CONECT      H2M1   1 C2M 
CONECT      H2M2   1 O2M 
CONECT      H4M1   1 C4M 
CONECT      H4M2   1 C4M 
CONECT      H5M1   1 C5M 
CONECT      H5M2   1 C5M 
CONECT      H5M3   1 C5M 
CONECT      H3M    1 O3M 
CONECT      H4M    1 O4M 
END   
HET    CDM             58
HETNAM     CDM 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL
FORMUL      CDM    C14 H25 N3 O14 P2

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science