Structure based on 1gx1

Ideal structure
Name: cytidine-5'-diphosphate
Formula: C9 H15 N3 O11 P2
Weight: 403.176
SMILES: "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O"
Spacial conformation based on PDB 1gx1.
Also present in other 64 PDB entries.
RESIDUE   CDP     40
CONECT      O3B    2 PB   HO3 
CONECT      PB     4 O3B  O1B  O2B  O3A 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   HO2 
CONECT      O3A    2 PB   PA  
CONECT      PA     4 O3A  O1A  O2A  O5' 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   HO1 
CONECT      O5'    2 PA   C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HA  
CONECT      C2'    4 C3'  O2'  C1'  H2' 
CONECT      O2'    2 C2'  HB  
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   N4   C5  
CONECT      N4     3 C4   H4N1 H4N2
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HA     1 O3' 
CONECT      H2'    1 C2' 
CONECT      HB     1 O2' 
CONECT      H1'    1 C1' 
CONECT      H4N1   1 N4  
CONECT      H4N2   1 N4  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      HO1    1 O2A 
CONECT      HO2    1 O2B 
CONECT      HO3    1 O3B 
END   
HET    CDP             40
HETNAM     CDP CYTIDINE-5'-DIPHOSPHATE
FORMUL      CDP    C9 H15 N3 O11 P2

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science