Structure based on 1gqc

Ideal structure
Name: cytidine 5'-monophosphate 3-deoxy-beta-d-gulo-oct-2-ulo-pyranosonic acid
Formula: C17 H26 N3 O15 P
Weight: 543.373
SMILES: "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[C]3(C[CH](O)[CH](O)[CH](O3)[CH](O)CO)C(O)=O)[CH](O)[CH]2O"
Spacial conformation based on PDB 1gqc.
Also present in other 5 PDB entries.
RESIDUE   CMK     62
CONECT      N1C    3 C2C  C6C  C1' 
CONECT      C2C    3 N1C  N3C  O2C 
CONECT      N3C    2 C2C  C4C 
CONECT      C4C    3 N3C  C5C  N4C 
CONECT      C5C    3 C4C  C6C  H5C 
CONECT      C6C    3 N1C  C5C  H6C 
CONECT      O2C    1 C2C 
CONECT      N4C    3 C4C  H4C1 H4C2
CONECT      C1'    4 N1C  C2'  O4'  H1' 
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  HA  
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      O3'    2 C3'  HB  
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  PA  
CONECT      PA     4 O5'  O1A  O2A  O2  
CONECT      O1A    2 PA   HO1A
CONECT      O2A    1 PA  
CONECT      O6     2 C2   C6  
CONECT      C2     4 O6   O2   C3   C1  
CONECT      O2     2 PA   C2  
CONECT      C3     4 C2   C4   H3C1 H3C2
CONECT      C4     4 C3   O4   C5   H4  
CONECT      O4     2 C4   HC  
CONECT      C5     4 C4   C6   O5   H5  
CONECT      C6     4 O6   C5   C7   H6  
CONECT      C7     4 C6   C8   O7   H7  
CONECT      C1     3 C2   O1X  O1Y 
CONECT      O1X    2 C1   H1X 
CONECT      O1Y    1 C1  
CONECT      O5     2 C5   HD  
CONECT      C8     4 C7   O8   H8C1 H8C2
CONECT      O8     2 C8   H8  
CONECT      O7     2 C7   HE  
CONECT      H5C    1 C5C 
CONECT      H6C    1 C6C 
CONECT      H4C1   1 N4C 
CONECT      H4C2   1 N4C 
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      HA     1 O2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      HB     1 O3' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      HO1A   1 O1A 
CONECT      H3C1   1 C3  
CONECT      H3C2   1 C3  
CONECT      H4     1 C4  
CONECT      HC     1 O4  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H7     1 C7  
CONECT      H1X    1 O1X 
CONECT      HD     1 O5  
CONECT      H8C1   1 C8  
CONECT      H8C2   1 C8  
CONECT      H8     1 O8  
CONECT      HE     1 O7  
END   
HET    CMK             62
HETSYN     CMK CMP-2-KETO-3-DEOXY-OCTULOSONIC ACID
HETNAM     CMK CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2-ULO
HETNAM   2 CMK -PYRANOSONIC ACID
FORMUL      CMK    C17 H26 N3 O15 P1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science