Structure based on 1j5a

Ideal structure
Name: clarithromycin
Formula: C38 H69 N O13
Weight: 747.953
SMILES: "CC[CH]1OC(=O)[CH](C)[CH](O[CH]2C[C](C)(OC)[CH](O)[CH](C)O2)[CH](C)[CH](O[CH]3O[CH](C)C[CH]([CH]3O)N(C)C)[C](C)(C[CH](C)C(=O)[CH](C)[CH](O)[C]1(C)O)OC"
Spacial conformation based on PDB 1j5a.
Also present on 5igj, 5igw, 6u18, 7f0d
RESIDUE   CTY    121
CONECT      C10    4 C11  C9   C34  H10 
CONECT      C11    4 C10  C12  O12  H11 
CONECT      C12    4 C11  C13  C35  O13 
CONECT      C13    4 C12  O2   C36  H13 
CONECT      O2     2 C13  C1  
CONECT      C2     4 C3   C1   C30  H2  
CONECT      C3     4 C2   C4   O3   H3  
CONECT      C4     4 C3   C5   C31  H4  
CONECT      C5     4 C4   C6   O7   H5  
CONECT      C6     4 C5   C7   C32  O10 
CONECT      C7     4 C6   C8   H71  H72 
CONECT      C8     4 C7   C9   C33  H8  
CONECT      C9     3 C10  C8   O11 
CONECT      O11    1 C9  
CONECT      C1     3 O2   C2   O1  
CONECT      O1     1 C1  
CONECT      O3     2 C3   C14 
CONECT      O7     2 C5   C22 
CONECT      C34    4 C10  H341 H342 H343
CONECT      C33    4 C8   H331 H332 H333
CONECT      C35    4 C12  H351 H352 H353
CONECT      O12    2 C11  HO12
CONECT      O13    2 C12  HO13
CONECT      C36    4 C13  C37  H361 H362
CONECT      C30    4 C2   H301 H302 H303
CONECT      C32    4 C6   H321 H322 H323
CONECT      O10    2 C6   C38 
CONECT      C22    4 O7   C23  O9   H22 
CONECT      C23    4 C22  C24  O8   H23 
CONECT      C24    4 C23  C25  N1   H24 
CONECT      C25    4 C24  C26  H251 H252
CONECT      C26    4 C25  O9   C27  H26 
CONECT      O9     2 C22  C26 
CONECT      N1     3 C24  C28  C29 
CONECT      C27    4 C26  H271 H272 H273
CONECT      O8     2 C23  HO8 
CONECT      C28    4 N1   H281 H282 H283
CONECT      C14    4 O3   C15  O4   H14 
CONECT      C15    4 C14  C16  H151 H152
CONECT      C16    4 C15  C17  O5   C19 
CONECT      C17    4 C16  C18  O6   H17 
CONECT      C18    4 C17  O4   C21  H18 
CONECT      O4     2 C14  C18 
CONECT      O5     2 C16  C20 
CONECT      O6     2 C17  HO6 
CONECT      C20    4 O5   H201 H202 H203
CONECT      C29    4 N1   H291 H292 H293
CONECT      C21    4 C18  H211 H212 H213
CONECT      C37    4 C36  H371 H372 H373
CONECT      C31    4 C4   H311 H312 H313
CONECT      C19    4 C16  H191 H192 H193
CONECT      C38    4 O10  H381 H382 H383
CONECT      H10    1 C10 
CONECT      H11    1 C11 
CONECT      H13    1 C13 
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      H71    1 C7  
CONECT      H72    1 C7  
CONECT      H8     1 C8  
CONECT      H341   1 C34 
CONECT      H342   1 C34 
CONECT      H343   1 C34 
CONECT      H331   1 C33 
CONECT      H332   1 C33 
CONECT      H333   1 C33 
CONECT      H351   1 C35 
CONECT      H352   1 C35 
CONECT      H353   1 C35 
CONECT      HO12   1 O12 
CONECT      HO13   1 O13 
CONECT      H361   1 C36 
CONECT      H362   1 C36 
CONECT      H301   1 C30 
CONECT      H302   1 C30 
CONECT      H303   1 C30 
CONECT      H321   1 C32 
CONECT      H322   1 C32 
CONECT      H323   1 C32 
CONECT      H22    1 C22 
CONECT      H23    1 C23 
CONECT      H24    1 C24 
CONECT      H251   1 C25 
CONECT      H252   1 C25 
CONECT      H26    1 C26 
CONECT      H271   1 C27 
CONECT      H272   1 C27 
CONECT      H273   1 C27 
CONECT      HO8    1 O8  
CONECT      H281   1 C28 
CONECT      H282   1 C28 
CONECT      H283   1 C28 
CONECT      H14    1 C14 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      H17    1 C17 
CONECT      H18    1 C18 
CONECT      HO6    1 O6  
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H203   1 C20 
CONECT      H291   1 C29 
CONECT      H292   1 C29 
CONECT      H293   1 C29 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H213   1 C21 
CONECT      H371   1 C37 
CONECT      H372   1 C37 
CONECT      H373   1 C37 
CONECT      H311   1 C31 
CONECT      H312   1 C31 
CONECT      H313   1 C31 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H193   1 C19 
CONECT      H381   1 C38 
CONECT      H382   1 C38 
CONECT      H383   1 C38 
END   
HET    CTY            121
HETNAM     CTY CLARITHROMYCIN
FORMUL      CTY    C38 H69 N1 O13

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science