Hetgroup: DCZ

Structure based on 1j90

Ideal structure

Name: 2'-deoxycytidine

Formula: C9 H13 N3 O4

Weight: 227.217

SMILES: "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO)O2"

Spacial conformation based on PDB 1j90.
Also present in other 27 PDB entries.

RESIDUE   DCZ     29
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   N3   O2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      O2     1 C2  
CONECT      N4     3 C4   HN41 HN42
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      O3'    2 C3'  HO3'
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  HO51
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
CONECT      H1'    1 C1' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      HO3'   1 O3' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      HO51   1 O5' 
END   
HET    DCZ             29
HETNAM     DCZ 2'-DEOXYCYTIDINE
FORMUL      DCZ    C9 H13 N3 O4

This OCA

MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)