Structure based on 1s9f | Ideal structure |
|
Name: 2',3'-dideoxycytosine-5'-diphosphate |
Formula: C9 H15 N3 O9 P2 |
Weight: 371.178 |
SMILES: "NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(=O)O[P](O)(O)=O)O2" |
Spacial conformation based on PDB
1s9f |
RESIDUE DDY 38
CONECT C4 3 C5 N4 N3
CONECT PB 4 O3B O1B O2B O3A
CONECT PA 4 O3A O1A O2A O5'
CONECT C2 3 O2 N1 N3
CONECT C5 3 C4 C6 H5
CONECT O2 1 C2
CONECT O3B 1 PB
CONECT O1B 2 PB H1B
CONECT O2B 2 PB H2B
CONECT O3A 2 PB PA
CONECT O1A 1 PA
CONECT O2A 2 PA H2A
CONECT O5' 2 PA C5'
CONECT C5' 4 O5' C4' H5'1 H5'2
CONECT C4' 4 C5' O4' C3' H4'
CONECT O4' 2 C4' C1'
CONECT C3' 4 C4' C2' H3'1 H3'2
CONECT C2' 4 C3' C1' H2'1 H2'2
CONECT C1' 4 O4' C2' N1 H1'
CONECT N1 3 C2 C1' C6
CONECT C6 3 C5 N1 H6
CONECT N4 3 C4 HN41 HN42
CONECT N3 2 C4 C2
CONECT H5 1 C5
CONECT H1B 1 O1B
CONECT H2B 1 O2B
CONECT H2A 1 O2A
CONECT H5'1 1 C5'
CONECT H5'2 1 C5'
CONECT H4' 1 C4'
CONECT H3'1 1 C3'
CONECT H3'2 1 C3'
CONECT H2'1 1 C2'
CONECT H2'2 1 C2'
CONECT H1' 1 C1'
CONECT H6 1 C6
CONECT HN41 1 N4
CONECT HN42 1 N4
END
HET DDY 38
HETSYN DDY DDCDP
HETNAM DDY 2',3'-DIDEOXYCYTOSINE-5'-DIPHOSPHATE
FORMUL DDY C9 H15 N3 O9 P2