Structure based on 1s9f

Ideal structure
Name: 2',3'-dideoxycytosine-5'-diphosphate
Formula: C9 H15 N3 O9 P2
Weight: 371.178
SMILES: "NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(=O)O[P](O)(O)=O)O2"
Spacial conformation based on PDB 1s9f
RESIDUE   DDY     38
CONECT      C4     3 C5   N4   N3  
CONECT      PB     4 O3B  O1B  O2B  O3A 
CONECT      PA     4 O3A  O1A  O2A  O5' 
CONECT      C2     3 O2   N1   N3  
CONECT      C5     3 C4   C6   H5  
CONECT      O2     1 C2  
CONECT      O3B    1 PB  
CONECT      O1B    2 PB   H1B 
CONECT      O2B    2 PB   H2B 
CONECT      O3A    2 PB   PA  
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   H2A 
CONECT      O5'    2 PA   C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  C2'  H3'1 H3'2
CONECT      C2'    4 C3'  C1'  H2'1 H2'2
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C2   C1'  C6  
CONECT      C6     3 C5   N1   H6  
CONECT      N4     3 C4   HN41 HN42
CONECT      N3     2 C4   C2  
CONECT      H5     1 C5  
CONECT      H1B    1 O1B 
CONECT      H2B    1 O2B 
CONECT      H2A    1 O2A 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'1   1 C3' 
CONECT      H3'2   1 C3' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H6     1 C6  
CONECT      HN41   1 N4  
CONECT      HN42   1 N4  
END   
HET    DDY             38
HETSYN     DDY DDCDP
HETNAM     DDY 2',3'-DIDEOXYCYTOSINE-5'-DIPHOSPHATE
FORMUL      DDY    C9 H15 N3 O9 P2

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science