Structure based on 1n3i

Ideal structure
Name: 3-hydroxy-4-hydroxymethyl-1-(4-oxo-4,4a,5,7a-tetrahydro-3h-pyrrolo[3,2-d]pyrimidin-7-ylmethyl)-pyrrolidinium
Formula: C12 H19 N4 O3
Weight: 267.304
SMILES: "OC[CH]1C[NH+](C[CH]1O)CC2=CN[CH]3[CH]2N=CNC3=O"
Spacial conformation based on PDB 1n3i.
Also present in other 10 PDB entries.
RESIDUE   DIH     36
CONECT      O5'    2 C5'  H1  
CONECT      C5'    4 O5'  C4'  H2   H3  
CONECT      C4'    4 C5'  C6'  C3'  H4  
CONECT      C6'    4 C4'  N1'  H5   H6  
CONECT      C3'    4 C4'  O3'  C2'  H7  
CONECT      O3'    2 C3'  H8  
CONECT      C2'    4 C3'  N1'  H9   H10 
CONECT      N1'    4 C6'  C2'  C10  H11 
CONECT      C10    4 N1'  C9   H12  H13 
CONECT      C9     3 C10  C8   C4  
CONECT      C8     3 C9   N7   H14 
CONECT      N7     3 C8   C5   H15 
CONECT      C5     3 N7   C6   C4  
CONECT      C6     3 C5   O6   N1  
CONECT      O6     1 C6  
CONECT      N1     3 C6   C2   H16 
CONECT      C2     3 N1   N3   H17 
CONECT      N3     2 C2   C4  
CONECT      C4     3 C9   C5   N3  
CONECT      H1     1 O5' 
CONECT      H2     1 C5' 
CONECT      H3     1 C5' 
CONECT      H4     1 C4' 
CONECT      H5     1 C6' 
CONECT      H6     1 C6' 
CONECT      H7     1 C3' 
CONECT      H8     1 O3' 
CONECT      H9     1 C2' 
CONECT      H10    1 C2' 
CONECT      H11    1 N1' 
CONECT      H12    1 C10 
CONECT      H13    1 C10 
CONECT      H14    1 C8  
CONECT      H15    1 N7  
CONECT      H16    1 N1  
CONECT      H17    1 C2  
END   
HET    DIH             36
HETNAM     DIH 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-i
HETNAM   2 DIH um-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-on
HETNAM   3 DIH e
FORMUL      DIH    C12 H17 N4 O3 1+

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science